Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   R2866_RS01300 Genome accession   NC_017451
Coordinates   253597..254211 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae R2866     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 248597..259211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2866_RS01275 (R2866_0254) - 249165..249683 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  R2866_RS01280 (R2866_0255) aspS 249902..251668 (+) 1767 WP_005649039.1 aspartate--tRNA ligase -
  R2866_RS01285 (R2866_0256) nudB 251690..252163 (+) 474 WP_005666660.1 dihydroneopterin triphosphate diphosphatase -
  R2866_RS01290 (R2866_0257) - 252175..252915 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R2866_RS01295 (R2866_0258) ruvC 252962..253534 (+) 573 WP_005666663.1 crossover junction endodeoxyribonuclease RuvC -
  R2866_RS01300 (R2866_0259) ruvA 253597..254211 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  R2866_RS01305 (R2866_0260) ruvB 254219..255226 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R2866_RS01310 (R2866_0261) - 255278..255565 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  R2866_RS01315 (R2866_0262) xerD 255738..256631 (-) 894 WP_005666666.1 site-specific tyrosine recombinase XerD -
  R2866_RS01320 (R2866_0263) - 256662..257828 (-) 1167 WP_005666667.1 3-phenylpropionate MFS transporter -
  R2866_RS01325 (R2866_0264) proC 257828..258643 (-) 816 WP_005649013.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=38314 R2866_RS01300 WP_005659994.1 253597..254211(+) (ruvA) [Haemophilus influenzae R2866]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=38314 R2866_RS01300 WP_005659994.1 253597..254211(+) (ruvA) [Haemophilus influenzae R2866]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment