Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EKN98_RS03190 Genome accession   NZ_CP043382
Coordinates   626854..627480 (-) Length   208 a.a.
NCBI ID   WP_023315767.1    Uniprot ID   A0A837FJ36
Organism   Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 621854..632480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKN98_RS03175 (EKN98_003175) helD 622093..624147 (-) 2055 WP_032608969.1 DNA helicase IV -
  EKN98_RS03180 (EKN98_003180) - 624270..624716 (+) 447 WP_003858149.1 YccF domain-containing protein -
  EKN98_RS03185 (EKN98_003185) yccS 624735..626897 (+) 2163 WP_032608968.1 YccS family putative transporter -
  EKN98_RS03190 (EKN98_003190) sxy/tfoX 626854..627480 (-) 627 WP_023315767.1 TfoX/Sxy family DNA transformation protein Regulator
  EKN98_RS03195 (EKN98_003195) sulA 627698..628207 (+) 510 WP_032610196.1 SOS-induced cell division inhibitor SulA -
  EKN98_RS03200 (EKN98_003200) ompA 628564..629616 (+) 1053 WP_017694761.1 porin OmpA -
  EKN98_RS03205 (EKN98_003205) matP 629682..630134 (-) 453 WP_003858158.1 macrodomain Ter protein MatP -
  EKN98_RS03210 (EKN98_003210) - 630321..632081 (+) 1761 WP_032608967.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.4592

>NTDB_id=383128 EKN98_RS03190 WP_023315767.1 626854..627480(-) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELTEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=383128 EKN98_RS03190 WP_023315767.1 626854..627480(-) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain WCHEX045001]
ATGAAAAAGATATCTTATGAGCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCTTCCTCTTTTCTGACCCTGATGAAACGAGGACGCCCAGTGCTGCTTAAT
TACTACCGTGTGGACGAAGGTCTGTGGCAAAACAGGGAAAAACTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAAGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCGATTGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTACGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837FJ36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment