Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HF907_RS14995 Genome accession   NZ_CP051173
Coordinates   3242465..3243085 (+) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain UW763     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3237465..3248085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF907_RS14985 (HF907_15040) sodB 3238701..3239279 (-) 579 WP_016724102.1 superoxide dismutase [Fe] -
  HF907_RS14990 (HF907_15045) xseA 3239425..3240840 (-) 1416 WP_064478030.1 exodeoxyribonuclease VII large subunit -
  HF907_RS14995 (HF907_15050) exbB 3242465..3243085 (+) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HF907_RS15000 (HF907_15055) - 3243108..3243539 (+) 432 WP_011002445.1 ExbD/TolR family protein -
  HF907_RS15005 (HF907_15060) lpxK 3243555..3244604 (+) 1050 WP_021155356.1 tetraacyldisaccharide 4'-kinase -
  HF907_RS15010 (HF907_15065) - 3244664..3244852 (+) 189 WP_003266270.1 Trm112 family protein -
  HF907_RS15015 (HF907_15070) kdsB 3244871..3245677 (+) 807 WP_016725950.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HF907_RS15020 (HF907_15075) adk 3245997..3246665 (+) 669 WP_011002448.1 adenylate kinase -
  HF907_RS15025 (HF907_15080) - 3246823..3247581 (+) 759 WP_064478031.1 3-hydroxyacyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=383097 HF907_RS14995 WP_011002444.1 3242465..3243085(+) (exbB) [Ralstonia pseudosolanacearum strain UW763]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=383097 HF907_RS14995 WP_011002444.1 3242465..3243085(+) (exbB) [Ralstonia pseudosolanacearum strain UW763]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGTCAGAACGTCGCCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403