Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SP670_RS09785 Genome accession   NC_014498
Coordinates   1827957..1829024 (-) Length   355 a.a.
NCBI ID   WP_000159562.1    Uniprot ID   B1I897
Organism   Streptococcus pneumoniae 670-6B     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822957..1834024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP670_RS09760 (SP670_1959) treR 1824880..1825590 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SP670_RS13130 - 1825787..1826945 (+) 1159 Protein_1865 transposase -
  SP670_RS09780 (SP670_1962) amiF 1827020..1827946 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  SP670_RS09785 (SP670_1963) amiE 1827957..1829024 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  SP670_RS09790 (SP670_1964) amiD 1829033..1829959 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SP670_RS09795 (SP670_1965) amiC 1829959..1831455 (-) 1497 WP_000759907.1 ABC transporter permease Regulator
  SP670_RS09800 (SP670_1966) amiA3 1831522..1833501 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39504.11 Da        Isoelectric Point: 4.8764

>NTDB_id=38309 SP670_RS09785 WP_000159562.1 1827957..1829024(-) (amiE) [Streptococcus pneumoniae 670-6B]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKEWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=38309 SP670_RS09785 WP_000159562.1 1827957..1829024(-) (amiE) [Streptococcus pneumoniae 670-6B]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTTGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGTAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGATTTG
ACAGCTTTATCTTCTCACAAGGAGTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TTTGGACCCCATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGCATTCCAGACGCAGATAGACGTTTTAATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACTATTCAAGCTCAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTATCATTTCACAACAA
TCTTTATTACCCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACGGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCTTTTGCCT
TGCGTTCTGACTACGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1I897

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.887

100

0.879
  amiE Streptococcus thermophilus LMG 18311

86.197

100

0.862
  amiE Streptococcus thermophilus LMD-9

86.197

100

0.862
  oppD Streptococcus mutans UA159

54.261

99.155

0.538

Multiple sequence alignment