Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HF907_RS05645 Genome accession   NZ_CP051173
Coordinates   1196381..1196848 (+) Length   155 a.a.
NCBI ID   WP_016723446.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW763     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191381..1201848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF907_RS05620 (HF907_05650) - 1191507..1192355 (-) 849 WP_064477561.1 TPM domain-containing protein -
  HF907_RS05625 (HF907_05655) - 1192368..1192994 (-) 627 WP_016723449.1 LemA family protein -
  HF907_RS05630 (HF907_05660) dapA 1193378..1194292 (+) 915 WP_011000622.1 4-hydroxy-tetrahydrodipicolinate synthase -
  HF907_RS05635 (HF907_05665) hemL 1194395..1195696 (-) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HF907_RS05640 (HF907_05670) - 1195908..1196090 (+) 183 WP_003261842.1 rubredoxin -
  HF907_RS05645 (HF907_05675) pilG 1196381..1196848 (+) 468 WP_016723446.1 response regulator Regulator
  HF907_RS05650 (HF907_05680) pilH 1196880..1197248 (+) 369 WP_003269243.1 response regulator Machinery gene
  HF907_RS05655 (HF907_05685) - 1197307..1197852 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  HF907_RS05660 (HF907_05690) - 1198098..1200329 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16767.51 Da        Isoelectric Point: 8.2887

>NTDB_id=383073 HF907_RS05645 WP_016723446.1 1196381..1196848(+) (pilG) [Ralstonia pseudosolanacearum strain UW763]
MVAQRENMMQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCD
ILMPKLDGYLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 468 bp        

>NTDB_id=383073 HF907_RS05645 WP_016723446.1 1196381..1196848(+) (pilG) [Ralstonia pseudosolanacearum strain UW763]
GTGGTCGCGCAACGCGAGAACATGATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCT
TGCCGGCCGTAAAGTGCTGGTGATCGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATT
GCCAGGTCGTGCTGGCCGAAGACGGGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGAC
ATCCTGATGCCCAAGCTGGACGGTTACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGT
CATGCTGTCGTCGCGCGACGGGGTGTTCGACCGCGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTT
TCTCGCGGGAAGCGCTGCTGGAGGCGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(32-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

76.774

0.419