Detailed information NTG0383055

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HF907_RS01650
• Genome accession: NZ_CP051173
• Coordinates: 356095..357564 (-)
• Length: 489 a.a.
• NCBI ID: WP_081272569.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain UW763
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 351095..362564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF907_RS01635 (HF907_01640)	-	351267..354830 (+)	3564	WP_064478142.1	indolepyruvate ferredoxin oxidoreductase family protein	-
HF907_RS01640 (HF907_01645)	-	355083..355502 (-)	420	WP_021154961.1	type VI secretion system amidase immunity protein Tai4	-
HF907_RS01645 (HF907_01650)	-	355499..355993 (-)	495	WP_064478143.1	type VI secretion system amidase effector protein Tae4	-
HF907_RS01650 (HF907_01655)	sbcB	356095..357564 (-)	1470	WP_081272569.1	exodeoxyribonuclease I	Machinery gene
HF907_RS01655 (HF907_01660)	eutC	357591..358403 (-)	813	WP_028861097.1	ethanolamine ammonia-lyase subunit EutC	-
HF907_RS01660 (HF907_01665)	-	358412..359806 (-)	1395	WP_064478145.1	ethanolamine ammonia-lyase subunit EutB	-
HF907_RS01665 (HF907_01670)	-	359890..361410 (-)	1521	WP_016724410.1	aldehyde dehydrogenase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55696.71 Da
• Isoelectric Point: 4.9918

>NTDB_id=383055 HF907_RS01650 WP_081272569.1 356095..357564(-) (sbcB) [Ralstonia pseudosolanacearum strain UW763]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAPRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGVDFAAIERHAGIAQGAPDMRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide

• Length: 1470 bp

>NTDB_id=383055 HF907_RS01650 WP_081272569.1 356095..357564(-) (sbcB) [Ralstonia pseudosolanacearum strain UW763]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGATTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGCCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTGGTGTGGCCGCTGGGCTGGCATCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCTTGCCCATCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCGTCGATTTCGCGGCCATCGAGCGTCACGCCGGTATCGCCCAAGGCGC
ACCCGACATGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAACTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTATCGCGCGCGCAATTTTCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATCCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAGTAG

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (19-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	47.046	96.933	0.456