Detailed information NTG0383023

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HF908_RS11680
• Genome accession: NZ_CP051171
• Coordinates: 2507855..2508985 (-)
• Length: 376 a.a.
• NCBI ID: WP_193025915.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2502855..2513985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS11660 (HF908_11735)	ndk	2503868..2504293 (-)	426	WP_020749022.1	nucleoside-diphosphate kinase	-
HF908_RS11665 (HF908_11740)	-	2504661..2505362 (+)	702	WP_193025913.1	Bax inhibitor-1/YccA family protein	-
HF908_RS11670 (HF908_11745)	rlmD	2505445..2506797 (-)	1353	WP_193028509.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
HF908_RS11675 (HF908_11750)	-	2506952..2507821 (+)	870	WP_193025914.1	endonuclease/exonuclease/phosphatase family protein	-
HF908_RS11680 (HF908_11755)	rpoS	2507855..2508985 (-)	1131	WP_193025915.1	RNA polymerase sigma factor RpoS	Regulator
HF908_RS11685 (HF908_11760)	-	2508994..2509821 (-)	828	WP_193025916.1	peptidoglycan DD-metalloendopeptidase family protein	-
HF908_RS11690 (HF908_11765)	-	2509823..2510788 (-)	966	WP_193025917.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HF908_RS11695 (HF908_11770)	surE	2510804..2511559 (-)	756	WP_193025918.1	5'/3'-nucleotidase SurE	-
HF908_RS11700 (HF908_11775)	-	2511753..2512727 (+)	975	WP_193025919.1	NADPH:quinone oxidoreductase family protein	-
HF908_RS11705 (HF908_11780)	-	2512805..2513911 (-)	1107	WP_193025920.1	alkene reductase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41900.90 Da
• Isoelectric Point: 4.7304

>NTDB_id=383023 HF908_RS11680 WP_193025915.1 2507855..2508985(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2279]
MPRQKAATSANPADETIGAVDGPNTPNGRSGRRARAAAPAASEDIEVVDPLVDEVPAAERADVADTSDANDSADEEDEDE
EGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFPARQVMIERNLRLVVSIAKGYLNRGV
PLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGRD
ASIEDIAHLLGKTTDEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRY
VVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1131 bp

>NTDB_id=383023 HF908_RS11680 WP_193025915.1 2507855..2508985(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2279]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAATCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACACCCCAAA
CGGGCGTAGCGGGCGGCGTGCGCGCGCCGCAGCGCCGGCAGCCTCCGAGGACATCGAAGTCGTCGATCCCCTGGTCGATG
AGGTGCCCGCCGCCGAGCGCGCCGACGTCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAAGAGGACGAGGACGAG
GAGGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCCGACACCGTCCAGCACTA
CCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCGAGT
TCCCCGCGCGGCAGGTGATGATCGAGCGCAACCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGCGTG
CCCTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTTCCG
TTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCCTGC
CGGTGCACGTGATCCGCGAGCTCAACCAGGTGTTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGCGAC
GCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGATGAGGTGCAGGACGTGCTCTCGCTCAACGAGCATAC
CACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGGGCCTCGC
CGGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGTTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGCTAC
GTGGTGGAGCGCCGGTTCGGCCTCAACCACATCGAACCGGCCACCCTCGAAGAACTGGCCGCGGAGATGGGCCTGACGCG
CGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGGATG
CGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (140-209)

• Sigma-70, region 4 (Sigma70_r4) (310-362)

• Sigma-70 region 3 (Sigma70_r3) (220-297)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (102-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	48.387	82.447	0.399