Detailed information NTG0382989

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HF908_RS01670
• Genome accession: NZ_CP051171
• Coordinates: 352466..353935 (+)
• Length: 489 a.a.
• NCBI ID: WP_193027232.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 347466..358935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS01655 (HF908_01675)	-	348620..350140 (+)	1521	WP_193027225.1	aldehyde dehydrogenase family protein	-
HF908_RS01660 (HF908_01680)	-	350224..351618 (+)	1395	WP_193027228.1	ethanolamine ammonia-lyase subunit EutB	-
HF908_RS01665 (HF908_01685)	eutC	351627..352439 (+)	813	WP_193027230.1	ethanolamine ammonia-lyase subunit EutC	-
HF908_RS01670 (HF908_01690)	sbcB	352466..353935 (+)	1470	WP_193027232.1	exodeoxyribonuclease I	Machinery gene
HF908_RS01675 (HF908_01695)	-	354136..357699 (-)	3564	WP_193027234.1	indolepyruvate ferredoxin oxidoreductase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55573.64 Da
• Isoelectric Point: 5.0520

>NTDB_id=382989 HF908_RS01670 WP_193027232.1 352466..353935(+) (sbcB) [Ralstonia pseudosolanacearum strain RUN2279]
MPASLRCPTRLTVTHTFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLITGITPQQC
LKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNDDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRTAQPRLFDFCFALRKKERVLAEIGDAPRPLIHISGM
YGVDRGCMAVVWPLGGHPTNKNELIVWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLLRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVAPE

Nucleotide

• Length: 1470 bp

>NTDB_id=382989 HF908_RS01670 WP_193027232.1 352466..353935(+) (sbcB) [Ralstonia pseudosolanacearum strain RUN2279]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCCTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGATGCCGAGCTCAACGAGATCGGCGAGCCGGTCG
AGCTGTTCTGTCGGCCGTCCAACGACTGGCTGCCCGACCCAGTATCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CTCAAGACAGGCATCCCCGAGCACCGCTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTACAACTCCATCCGCTTTGACGATGAAGTCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGGTGGGATCTGCTCGACGTGGTACGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGACGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCGCA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCACCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGTGACGCGCCGCGTCCGCTCATCCACATCTCCGGCATG
TACGGCGTAGACCGCGGCTGCATGGCGGTTGTCTGGCCGCTCGGCGGACACCCGACCAACAAAAACGAACTGATCGTGTG
GGATCTGTCGTTTGATCCGTCGGAGCTGTTCCACATGGACGTGGCTGCCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCCTGCCCATCAAGTCGATCCACATTAACAAGTCGCCCATCGTGATCGGCAACCTGAAG
ACACTGCAGCCGGCGCAGGCCGAGCGCTGGGGCGTCGACTTCGCGGCCATCGAGCGTCACGCCGGTATCGCCCAAGGCGC
ACCCGACCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAACTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAACGACGACCGCCGCACGCTCAACGAACTGCGCACGCTCTCAGGCGAGCAGCTCGCGCAACTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTGCGCTACCGCGCACGCAACTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGACAAGGGCGATGCACGTGCCGAAGGCATTCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGGCGCCGGAATAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (18-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	45.702	97.546	0.446