Detailed information NTG0382958

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HF909_RS11845
• Genome accession: NZ_CP051169
• Coordinates: 2479188..2480318 (-)
• Length: 376 a.a.
• NCBI ID: WP_193025915.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2474
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2474188..2485318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF909_RS11825 (HF909_11895)	ndk	2475201..2475626 (-)	426	WP_020749022.1	nucleoside-diphosphate kinase	-
HF909_RS11830 (HF909_11900)	-	2475994..2476695 (+)	702	WP_193034750.1	Bax inhibitor-1/YccA family protein	-
HF909_RS11835 (HF909_11905)	rlmD	2476778..2478130 (-)	1353	WP_193028509.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
HF909_RS11840 (HF909_11910)	-	2478285..2479154 (+)	870	WP_193025914.1	endonuclease/exonuclease/phosphatase family protein	-
HF909_RS11845 (HF909_11915)	rpoS	2479188..2480318 (-)	1131	WP_193025915.1	RNA polymerase sigma factor RpoS	Regulator
HF909_RS11850 (HF909_11920)	-	2480327..2481154 (-)	828	WP_193025916.1	peptidoglycan DD-metalloendopeptidase family protein	-
HF909_RS11855 (HF909_11925)	-	2481156..2482121 (-)	966	WP_193025917.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HF909_RS11860 (HF909_11930)	surE	2482137..2482892 (-)	756	WP_011001154.1	5'/3'-nucleotidase SurE	-
HF909_RS11865 (HF909_11935)	-	2483086..2484060 (+)	975	WP_193025919.1	NADPH:quinone oxidoreductase family protein	-
HF909_RS11870 (HF909_11940)	-	2484138..2485244 (-)	1107	WP_193034752.1	alkene reductase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41900.90 Da
• Isoelectric Point: 4.7304

>NTDB_id=382958 HF909_RS11845 WP_193025915.1 2479188..2480318(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2474]
MPRQKAATSANPADETIGAVDGPNTPNGRSGRRARAAAPAASEDIEVVDPLVDEVPAAERADVADTSDANDSADEEDEDE
EGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFPARQVMIERNLRLVVSIAKGYLNRGV
PLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGRD
ASIEDIAHLLGKTTDEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHRY
VVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1131 bp

>NTDB_id=382958 HF909_RS11845 WP_193025915.1 2479188..2480318(-) (rpoS) [Ralstonia pseudosolanacearum strain RUN2474]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAATCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACACCCCAAA
CGGGCGTAGCGGGCGGCGTGCGCGCGCCGCAGCGCCGGCAGCCTCCGAGGACATCGAAGTCGTCGATCCCCTGGTCGATG
AGGTGCCCGCCGCCGAGCGCGCCGACGTCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAAGAGGACGAGGACGAG
GAGGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCCGACACCGTCCAGCACTA
CCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCGAGT
TCCCCGCGCGGCAGGTGATGATCGAGCGCAACCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGCGTG
CCCTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTTCCG
TTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCCTGC
CGGTGCACGTGATCCGCGAGCTCAACCAGGTGTTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGCGAC
GCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGATGAGGTGCAGGACGTGCTCTCGCTCAACGAGCATAC
CACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGGGCCTCGC
CGGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGTTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGCTAC
GTGGTGGAGCGCCGGTTCGGCCTCAACCACATCGAACCGGCCACCCTCGAAGAACTGGCCGCGGAGATGGGCCTGACGCG
CGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGGATG
CGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (140-209)

• Sigma-70, region 4 (Sigma70_r4) (310-362)

• Sigma-70 region 3 (Sigma70_r3) (220-297)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (102-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	48.387	82.447	0.399