Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HF909_RS04525 Genome accession   NZ_CP051169
Coordinates   939753..940373 (-) Length   206 a.a.
NCBI ID   WP_193027737.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2474     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 934753..945373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF909_RS04495 (HF909_04545) - 935256..936014 (-) 759 WP_193027732.1 3-hydroxyacyl-CoA dehydrogenase -
  HF909_RS04500 (HF909_04550) adk 936172..936840 (-) 669 WP_193027733.1 adenylate kinase -
  HF909_RS04505 (HF909_04555) kdsB 937160..937966 (-) 807 WP_193035920.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HF909_RS04510 (HF909_04560) - 937985..938173 (-) 189 WP_003266270.1 Trm112 family protein -
  HF909_RS04515 (HF909_04565) lpxK 938234..939283 (-) 1050 WP_193027735.1 tetraacyldisaccharide 4'-kinase -
  HF909_RS04520 (HF909_04570) - 939299..939730 (-) 432 WP_020747701.1 ExbD/TolR family protein -
  HF909_RS04525 (HF909_04575) exbB 939753..940373 (-) 621 WP_193027737.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HF909_RS04530 (HF909_04580) xseA 941998..943413 (+) 1416 WP_193035922.1 exodeoxyribonuclease VII large subunit -
  HF909_RS04535 (HF909_04585) sodB 943559..944137 (+) 579 WP_020747704.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22302.18 Da        Isoelectric Point: 9.3208

>NTDB_id=382939 HF909_RS04525 WP_193027737.1 939753..940373(-) (exbB) [Ralstonia pseudosolanacearum strain RUN2474]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVTHRLERYLNALGTIASVAPLMGLFGTVIGMIEIFGSQTAAGTNPQALAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=382939 HF909_RS04525 WP_193027737.1 939753..940373(-) (exbB) [Ralstonia pseudosolanacearum strain RUN2474]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCTCTGGCCGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCACCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGCCTGTTCGGCACCGTGATCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGGCGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACACTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAGCTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403