Detailed information NTG0382925

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HF909_RS01650
• Genome accession: NZ_CP051169
• Coordinates: 344990..346459 (+)
• Length: 489 a.a.
• NCBI ID: WP_193035657.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2474
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 339990..351459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF909_RS01635 (HF909_01650)	-	341144..342664 (+)	1521	WP_193035650.1	aldehyde dehydrogenase family protein	-
HF909_RS01640 (HF909_01655)	-	342748..344142 (+)	1395	WP_193035653.1	ethanolamine ammonia-lyase subunit EutB	-
HF909_RS01645 (HF909_01660)	eutC	344151..344963 (+)	813	WP_193035655.1	ethanolamine ammonia-lyase subunit EutC	-
HF909_RS01650 (HF909_01665)	sbcB	344990..346459 (+)	1470	WP_193035657.1	exodeoxyribonuclease I	Machinery gene
HF909_RS01655 (HF909_01670)	-	346660..350223 (-)	3564	WP_193035659.1	indolepyruvate ferredoxin oxidoreductase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55607.66 Da
• Isoelectric Point: 5.0520

>NTDB_id=382925 HF909_RS01650 WP_193035657.1 344990..346459(+) (sbcB) [Ralstonia pseudosolanacearum strain RUN2474]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLITGITPQQC
LKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNDDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRTAQPRLFDFCFALRKKERVLAEIGDAPRPLIHISGM
YGVDRGCMAVVWPLGGHPTNKNELIVWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLLRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVAPE

Nucleotide

• Length: 1470 bp

>NTDB_id=382925 HF909_RS01650 WP_193035657.1 344990..346459(+) (sbcB) [Ralstonia pseudosolanacearum strain RUN2474]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGATGCCGAGCTCAACGAGATCGGCGAGCCGGTCG
AGCTGTTCTGCCGGCCGTCCAACGACTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CTCAAGACAGGCATCCCCGAGCACCGCTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTACAACTCCATCCGCTTTGACGACGAGGTCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGGTGGGATCTGCTCGACGTGGTACGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGACGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCGCA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCACCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGTGACGCGCCGCGTCCGCTCATCCACATCTCCGGCATG
TACGGCGTAGACCGCGGCTGCATGGCGGTTGTCTGGCCGCTCGGCGGACACCCGACCAACAAAAACGAACTGATCGTGTG
GGATCTGTCGTTTGATCCGTCGGAGCTGTTCCACATGGACGTGGCTGCCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCCTGCCCATCAAGTCGATCCACATTAACAAGTCGCCCATCGTGATCGGCAACCTGAAG
ACACTGCAGCCGGCGCAGGCCGAGCGCTGGGGCGTCGACTTCGCGGCCATCGAGCGTCACGCCGGTATCGCCCAAGGCGC
ACCCGACCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAACTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAACGACGACCGCCGCACGCTCAACGAACTGCGCACGCTCTCAGGCGAGCAGCTCGCGCAACTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTGCGCTACCGCGCACGCAACTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGACAAGGGCGATGCACGTGCCGAAGGCATTCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGGCGCCGGAATAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (19-199)

• Exonuclease C-terminal (ExoI_SH3) (218-484)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	45.912	97.546	0.448