Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HF584_RS11845 Genome accession   NZ_CP051165
Coordinates   2466476..2466946 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain NGA84b     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461476..2471946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS11815 (HF584_10780) - 2461516..2461929 (+) 414 WP_054190807.1 thiol-disulfide oxidoreductase DCC family protein -
  HF584_RS11820 (HF584_10775) - 2462129..2462572 (+) 444 WP_054190806.1 Dps family protein -
  HF584_RS11825 (HF584_10770) deoD 2462692..2463402 (-) 711 WP_054190805.1 purine-nucleoside phosphorylase -
  HF584_RS11830 (HF584_10765) deoC 2463717..2464379 (+) 663 WP_054193671.1 deoxyribose-phosphate aldolase -
  HF584_RS11835 (HF584_10760) - 2464660..2465961 (+) 1302 WP_054190465.1 pyrimidine-nucleoside phosphorylase -
  HF584_RS11840 (HF584_10755) - 2465975..2466325 (+) 351 WP_054190464.1 hypothetical protein -
  HF584_RS11845 (HF584_10750) luxS 2466476..2466946 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  HF584_RS11850 (HF584_10745) - 2467257..2468441 (+) 1185 WP_054190463.1 M20 family metallopeptidase -
  HF584_RS11855 (HF584_10740) - 2468441..2469634 (+) 1194 WP_054190462.1 hypothetical protein -
  HF584_RS11860 (HF584_10735) - 2470045..2470716 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  HF584_RS11865 (HF584_10730) coaW 2470847..2471650 (-) 804 WP_000862728.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=382907 HF584_RS11845 WP_000164421.1 2466476..2466946(-) (luxS) [Staphylococcus aureus strain NGA84b]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=382907 HF584_RS11845 WP_000164421.1 2466476..2466946(-) (luxS) [Staphylococcus aureus strain NGA84b]
ATGACAAAAATGAATGTTGAAAGTTTTAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404