Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HF584_RS05440 Genome accession   NZ_CP051165
Coordinates   1126141..1127223 (-) Length   360 a.a.
NCBI ID   WP_054189265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NGA84b     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121141..1132223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF584_RS05420 (HF584_03435) - 1121756..1121853 (-) 98 Protein_1078 hypothetical protein -
  HF584_RS05425 (HF584_03430) secA 1121895..1124426 (-) 2532 WP_054189268.1 preprotein translocase subunit SecA -
  HF584_RS05430 (HF584_03425) raiA 1124841..1125413 (-) 573 WP_054189267.1 ribosome-associated translation inhibitor RaiA -
  HF584_RS05435 (HF584_03420) - 1125474..1126148 (-) 675 WP_054189266.1 ComF family protein -
  HF584_RS05440 (HF584_03415) comFA 1126141..1127223 (-) 1083 WP_054189265.1 DEAD/DEAH box helicase Machinery gene
  HF584_RS05445 (HF584_03410) fakB1 1127587..1128453 (-) 867 WP_054189264.1 fatty acid kinase binding subunit FakB1 -
  HF584_RS05450 (HF584_03405) - 1128597..1129238 (+) 642 WP_054189263.1 YigZ family protein -
  HF584_RS05455 (HF584_03400) - 1129410..1130465 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  HF584_RS05460 (HF584_03395) - 1130783..1131853 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42047.54 Da        Isoelectric Point: 9.6803

>NTDB_id=382884 HF584_RS05440 WP_054189265.1 1126141..1127223(-) (comFA) [Staphylococcus aureus strain NGA84b]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQAYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQQMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDIFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQISGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=382884 HF584_RS05440 WP_054189265.1 1126141..1127223(-) (comFA) [Staphylococcus aureus strain NGA84b]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGGCTTATGCCTCTGAGCATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCG
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGTACAGTGCATCAACTTTACCGCTTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCAAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGC
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATATTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTTCTGGACGCGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAAATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364