Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   KHP_RS05775 Genome accession   NC_017382
Coordinates   1208517..1209566 (+) Length   349 a.a.
NCBI ID   WP_000115538.1    Uniprot ID   -
Organism   Helicobacter pylori 51     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203517..1214566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS05755 (KHP_1083) - 1203664..1204407 (+) 744 WP_014537390.1 carbonic anhydrase -
  KHP_RS05760 (KHP_1084) - 1204643..1205686 (-) 1044 WP_041202090.1 DUF874 family protein -
  KHP_RS05765 (KHP_1085) asd 1206100..1207140 (-) 1041 WP_000860914.1 aspartate-semialdehyde dehydrogenase -
  KHP_RS05770 (KHP_1086) hisS 1207127..1208455 (-) 1329 WP_000632546.1 histidine--tRNA ligase -
  KHP_RS05775 (KHP_1087) waaF 1208517..1209566 (+) 1050 WP_000115538.1 lipopolysaccharide heptosyltransferase II Regulator
  KHP_RS05780 (KHP_1088) - 1209756..1210082 (-) 327 WP_000744163.1 hypothetical protein -
  KHP_RS05785 (KHP_1089) fusA 1210623..1212701 (-) 2079 WP_000101843.1 elongation factor G -
  KHP_RS05790 (KHP_1090) rpsG 1212713..1213180 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  KHP_RS05795 (KHP_1091) rpsL 1213196..1213603 (-) 408 WP_001142325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39587.55 Da        Isoelectric Point: 9.8130

>NTDB_id=38288 KHP_RS05775 WP_000115538.1 1208517..1209566(+) (waaF) [Helicobacter pylori 51]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNVRFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=38288 KHP_RS05775 WP_000115538.1 1208517..1209566(+) (waaF) [Helicobacter pylori 51]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGTGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTACTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361

Multiple sequence alignment