Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FXF61_RS10085 Genome accession   NZ_CP043320
Coordinates   2209041..2210405 (-) Length   454 a.a.
NCBI ID   WP_151185137.1    Uniprot ID   A0A5J6QAT2
Organism   Pseudomonas sp. C27(2019)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204041..2215405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXF61_RS10060 (FXF61_10060) sfsA 2205175..2205885 (-) 711 WP_151185133.1 DNA/RNA nuclease SfsA -
  FXF61_RS10065 (FXF61_10065) - 2205875..2207059 (-) 1185 WP_151185134.1 pyridoxal phosphate-dependent aminotransferase -
  FXF61_RS10070 (FXF61_10070) - 2207098..2207909 (-) 812 Protein_1993 helical backbone metal receptor -
  FXF61_RS10075 (FXF61_10075) - 2207909..2208328 (-) 420 WP_151185135.1 MFS transporter -
  FXF61_RS10080 (FXF61_10080) ribA 2208325..2208939 (-) 615 WP_151185136.1 GTP cyclohydrolase II -
  FXF61_RS10085 (FXF61_10085) radA 2209041..2210405 (-) 1365 WP_151185137.1 DNA repair protein RadA Machinery gene
  FXF61_RS14925 - 2211378..2211542 (-) 165 WP_178087298.1 hypothetical protein -
  FXF61_RS10105 (FXF61_10105) - 2211972..2212307 (-) 336 WP_151185142.1 hypothetical protein -
  FXF61_RS10110 (FXF61_10110) - 2212428..2212697 (-) 270 WP_151185143.1 GTP-binding protein -
  FXF61_RS10115 (FXF61_10115) - 2212853..2213104 (+) 252 WP_151185145.1 hypothetical protein -
  FXF61_RS10120 (FXF61_10120) - 2213101..2213721 (-) 621 WP_151185146.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FXF61_RS10125 (FXF61_10125) - 2213855..2214397 (+) 543 WP_151185147.1 DUF4136 domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48845.38 Da        Isoelectric Point: 6.6954

>NTDB_id=382869 FXF61_RS10085 WP_151185137.1 2209041..2210405(-) (radA) [Pseudomonas sp. C27(2019)]
MAKAKRMYGCTECGSTFPKWAGQCGECGVWNTLVETMIEAGTSEKTGRAGWAGDQAELKTLAQVSVEEVPRFSTQSGELD
RVLGGGLVDGSVVLLGGDPGIGKSTILLQTLCNMAKTTTALYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIETILAV
ARREKPRVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKDGALAGPRVLEHMVDTVLYFEG
EADGRLRMLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRAQEAVSGSVVMATWEGSRPMLIEVQALVDTSHLGN
PRRVTVGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIISSLLNRPLEHGLLVFGEIGLSGE
IRPVPSGQERLKEAAKHGFKRAIVPKANAPREMPAGLEVIAVTRLEEALDALFE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=382869 FXF61_RS10085 WP_151185137.1 2209041..2210405(-) (radA) [Pseudomonas sp. C27(2019)]
ATGGCTAAGGCCAAGCGTATGTACGGTTGTACCGAGTGTGGATCGACTTTTCCAAAATGGGCAGGGCAATGCGGCGAGTG
TGGTGTTTGGAATACGCTCGTTGAGACCATGATTGAAGCAGGTACATCGGAGAAAACGGGCCGCGCCGGTTGGGCTGGTG
ATCAAGCTGAGCTGAAAACCTTAGCGCAAGTCAGTGTGGAAGAAGTCCCGCGATTCTCAACGCAATCGGGTGAGCTTGAC
CGCGTCCTTGGCGGAGGCTTAGTCGATGGCTCAGTAGTATTGCTCGGTGGTGATCCTGGTATCGGTAAATCCACAATTCT
TTTGCAAACCCTGTGCAACATGGCAAAAACCACCACAGCGCTGTACGTCACAGGTGAAGAGTCTCAGCAGCAAGTGGCGA
TGCGTGCACGTCGACTCGATTTGCCGCAAGACAAGCTCAAAGTGATGACCGAAACCTGTATTGAAACGATATTAGCCGTC
GCGCGCCGAGAAAAACCACGGGTGATGGTGATTGACTCGATTCAAACAATTTTTACTGAACAGTTACAATCCGCTCCTGG
CGGTGTCTCGCAAGTGCGTGAAAGTGCCGCCTTACTGGTGCGTTATGCCAAACAAAGTGGCACAGCGATTTTCTTAGTCG
GACATGTCACTAAGGACGGCGCGTTAGCTGGGCCGCGCGTGCTGGAGCATATGGTGGATACCGTGCTTTATTTTGAAGGT
GAAGCAGATGGCCGTTTGCGTATGCTGCGCGCAGTGAAAAATCGCTTTGGCGCAGTCAATGAGCTGGGCGTGTTTGGCAT
GACTGATCGCGGCCTTAAAGAAGTCTCAAATCCCTCGGCTATTTTTCTTAATCGTGCCCAAGAAGCGGTATCGGGCAGTG
TGGTGATGGCAACGTGGGAAGGCTCGCGACCAATGTTGATTGAAGTGCAGGCCTTAGTTGATACCAGCCATTTAGGTAAT
CCGCGCCGGGTAACCGTTGGCTTGGACCAAAACCGCTTGGCGATGTTGCTCGCCGTGTTGCACCGTCATGGCGGTATCCC
CACTCACGATCAAGATGTATTTCTGAATGTGGTGGGTGGCGTAAAAGTGTTGGAAACAGCATCGGATTTAGCCTTGATGG
CCGCCATTATTTCCAGCCTGCTTAACCGTCCGCTTGAACATGGTTTGTTGGTGTTTGGCGAAATCGGCTTGTCCGGTGAG
ATCAGGCCTGTGCCCAGTGGCCAAGAGCGTTTAAAAGAAGCAGCCAAGCATGGCTTTAAACGCGCTATTGTGCCCAAAGC
CAATGCGCCGCGTGAAATGCCTGCTGGGCTAGAAGTGATCGCTGTTACGCGCCTCGAAGAGGCCTTGGATGCGTTGTTTG
AGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-220)

Subunit ChlI of Mg-chelatase (ChlI)

(350-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6QAT2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.238

100

0.482
  radA Streptococcus mitis SK321

46.389

100

0.467
  radA Streptococcus mitis NCTC 12261

46.171

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.476

100

0.465
  radA Streptococcus pneumoniae R6

46.476

100

0.465
  radA Streptococcus pneumoniae Rx1

46.476

100

0.465
  radA Streptococcus pneumoniae D39

46.476

100

0.465

Multiple sequence alignment