Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HF575_RS12450 Genome accession   NZ_CP051158
Coordinates   2646033..2646548 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 17MR471     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2641033..2651548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF575_RS12405 (HF575_12440) csrA 2641620..2641805 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HF575_RS12435 (HF575_12470) yqaB 2643263..2643829 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HF575_RS12440 (HF575_12475) yqaA 2643826..2644254 (+) 429 WP_001287454.1 YqaA family protein -
  HF575_RS12445 (HF575_12480) gshA 2644327..2645883 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HF575_RS12450 (HF575_12485) luxS 2646033..2646548 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HF575_RS12455 (HF575_12490) emrB 2646612..2648150 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HF575_RS12460 (HF575_12495) emrA 2648167..2649339 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HF575_RS12465 (HF575_12500) emrR 2649466..2649996 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HF575_RS12470 (HF575_12510) ygaH 2650087..2650422 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HF575_RS12475 (HF575_12515) ygaZ 2650412..2651149 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=382804 HF575_RS12450 WP_001130211.1 2646033..2646548(+) (luxS) [Escherichia coli strain 17MR471]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=382804 HF575_RS12450 WP_001130211.1 2646033..2646548(+) (luxS) [Escherichia coli strain 17MR471]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731