Detailed information NTG0382801

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HF575_RS12175
• Genome accession: NZ_CP051158
• Coordinates: 2593215..2594207 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 17MR471
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2588215..2599207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF575_RS12145 (HF575_12180)	ispD	2588276..2588986 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HF575_RS12150 (HF575_12185)	ispF	2588986..2589465 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HF575_RS12155 (HF575_12190)	truD	2589462..2590511 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
HF575_RS12160 (HF575_12195)	surE	2590492..2591253 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HF575_RS12165 (HF575_12200)	pcm	2591247..2591873 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HF575_RS12170 (HF575_12205)	nlpD	2592058..2593152 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HF575_RS12175 (HF575_12210)	rpoS	2593215..2594207 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HF575_RS12180 (HF575_12215)	ygbN	2594301..2595665 (-)	1365	WP_000104459.1	GntP family transporter	-
HF575_RS12185 (HF575_12220)	ygbM	2595754..2596530 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
HF575_RS12190 (HF575_12225)	ygbL	2596535..2597173 (-)	639	WP_001278994.1	aldolase	-
HF575_RS12195 (HF575_12230)	otnK	2597170..2598432 (-)	1263	WP_139947122.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=382801 HF575_RS12175 WP_000081550.1 2593215..2594207(+) (rpoS) [Escherichia coli strain 17MR471]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=382801 HF575_RS12175 WP_000081550.1 2593215..2594207(+) (rpoS) [Escherichia coli strain 17MR471]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715