Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   FYN22_RS14955 Genome accession   NZ_CP043307
Coordinates   3082836..3083159 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain Acsw19     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3083403..3084413 3082836..3083159 flank 244


Gene organization within MGE regions


Location: 3082836..3084413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS14955 (FYN22_14955) hns 3082836..3083159 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  FYN22_RS14965 (FYN22_14965) - 3083403..3084371 (-) 969 WP_012308653.1 IS30 family transposase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=382780 FYN22_RS14955 WP_004692786.1 3082836..3083159(-) (hns) [Acinetobacter johnsonii strain Acsw19]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=382780 FYN22_RS14955 WP_004692786.1 3082836..3083159(-) (hns) [Acinetobacter johnsonii strain Acsw19]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGTATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86

Multiple sequence alignment