Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FYN22_RS14430 Genome accession   NZ_CP043307
Coordinates   2965451..2967673 (+) Length   740 a.a.
NCBI ID   WP_148826844.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2960451..2972673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS14405 (FYN22_14405) lnt 2960879..2962438 (+) 1560 WP_148826842.1 apolipoprotein N-acyltransferase -
  FYN22_RS14410 (FYN22_14410) - 2962505..2962843 (-) 339 WP_148826843.1 tRNA-binding protein -
  FYN22_RS14415 (FYN22_14415) - 2963003..2963338 (-) 336 WP_125274169.1 hypothetical protein -
  FYN22_RS14420 (FYN22_14420) gspG 2963622..2964059 (-) 438 WP_078425780.1 type II secretion system major pseudopilin GspG -
  FYN22_RS14425 (FYN22_14425) gspF 2964093..2965298 (-) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  FYN22_RS14430 (FYN22_14430) priA 2965451..2967673 (+) 2223 WP_148826844.1 primosomal protein N' Machinery gene
  FYN22_RS14435 (FYN22_14435) - 2967756..2969597 (+) 1842 WP_148826845.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  FYN22_RS14440 (FYN22_14440) - 2969648..2970523 (+) 876 WP_148826846.1 Hsp33 family molecular chaperone HslO -
  FYN22_RS14445 (FYN22_14445) - 2970723..2971175 (+) 453 WP_062035133.1 DUF2147 domain-containing protein -
  FYN22_RS14450 (FYN22_14450) - 2971319..2972272 (+) 954 WP_062035135.1 DnaJ C-terminal domain-containing protein -
  FYN22_RS14455 (FYN22_14455) - 2972283..2972639 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84210.09 Da        Isoelectric Point: 8.9705

>NTDB_id=382776 FYN22_RS14430 WP_148826844.1 2965451..2967673(+) (priA) [Acinetobacter johnsonii strain Acsw19]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDTKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARRSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=382776 FYN22_RS14430 WP_148826844.1 2965451..2967673(+) (priA) [Acinetobacter johnsonii strain Acsw19]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATCCGCGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAGCTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATACTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCACGCTGCTTTACCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAACGTTCAGAAAAACAACAAGATGCCTATAAAATTCTAAAGCTTCATCCCACCGGA
ACGTCTGAAAATATTTTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCTCAAGACTTTAAACCACAAGCGATGACGCTAGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAGGCTCGTCGTAGCTACCACGCTTTCTTACTGGATGGTTTAACGGGTAGTGGGAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAGAGCTTCGATTGTGATTGGGACACGTTCTGCCATCTATACGCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGATCTATCTTTCAAACAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCGCAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCACATTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACATTGTCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTTGATCGCGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAAATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATCGACTCGGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATTATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGATCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGAC
GCTATCAAGCACATATGGTGCTACTGTCCAAAGACCGTGCGCGTATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.683

98.784

0.708

Multiple sequence alignment