Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FYN22_RS02045 Genome accession   NZ_CP043307
Coordinates   426682..427539 (+) Length   285 a.a.
NCBI ID   WP_148825457.1    Uniprot ID   A0AAJ6LGC5
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421682..432539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS02020 (FYN22_02020) - 422297..422671 (-) 375 WP_148825454.1 hypothetical protein -
  FYN22_RS02025 (FYN22_02025) - 422883..423935 (-) 1053 WP_171522815.1 sensor domain-containing diguanylate cyclase -
  FYN22_RS02030 (FYN22_02030) - 424211..424786 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  FYN22_RS02035 (FYN22_02035) - 424877..425587 (-) 711 WP_148825455.1 DUF3108 domain-containing protein -
  FYN22_RS02040 (FYN22_02040) - 425743..426420 (-) 678 WP_148825456.1 hypothetical protein -
  FYN22_RS02045 (FYN22_02045) tonB2 426682..427539 (+) 858 WP_148825457.1 energy transducer TonB Machinery gene
  FYN22_RS02050 (FYN22_02050) - 427829..430021 (+) 2193 WP_148825458.1 TonB-dependent siderophore receptor -
  FYN22_RS02055 (FYN22_02055) - 430199..430609 (-) 411 WP_094148531.1 hypothetical protein -
  FYN22_RS02060 (FYN22_02060) ybeY 430711..431190 (-) 480 WP_078426187.1 rRNA maturation RNase YbeY -
  FYN22_RS02065 (FYN22_02065) - 431248..432324 (-) 1077 WP_004977846.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32585.06 Da        Isoelectric Point: 6.3661

>NTDB_id=382757 FYN22_RS02045 WP_148825457.1 426682..427539(+) (tonB2) [Acinetobacter johnsonii strain Acsw19]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=382757 FYN22_RS02045 WP_148825457.1 426682..427539(+) (tonB2) [Acinetobacter johnsonii strain Acsw19]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGTCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGGATTCAAGCCAAGCAAGATATTTCGGCAGCCTATCTTGA
AAAGTTTCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAACAACGACTGGCGGGTGAAG
TACGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.643

98.246

0.733

Multiple sequence alignment