Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   FYN22_RS01390 Genome accession   NZ_CP043307
Coordinates   306461..310345 (+) Length   1294 a.a.
NCBI ID   WP_215900984.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301461..315345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS01360 (FYN22_01360) gmk 301740..302363 (-) 624 WP_004691467.1 guanylate kinase -
  FYN22_RS01365 (FYN22_01365) ispH 302498..303448 (+) 951 WP_004978047.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FYN22_RS01370 (FYN22_01370) - 303614..304165 (+) 552 WP_228716711.1 Tfp pilus assembly protein FimT/FimU -
  FYN22_RS01375 (FYN22_01375) pilV 304165..304683 (+) 519 WP_114836316.1 type IV pilus modification protein PilV Machinery gene
  FYN22_RS01380 (FYN22_01380) - 304683..305642 (+) 960 WP_148825399.1 PilW family protein -
  FYN22_RS01385 (FYN22_01385) - 305635..306441 (+) 807 WP_148825400.1 PilX N-terminal domain-containing pilus assembly protein -
  FYN22_RS01390 (FYN22_01390) pilY1 306461..310345 (+) 3885 WP_215900984.1 PilC/PilY family type IV pilus protein Machinery gene
  FYN22_RS19005 - 310355..310457 (+) 103 Protein_266 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FYN22_RS01395 (FYN22_01395) - 310430..310888 (+) 459 WP_410487264.1 type IV pilin protein -
  FYN22_RS01400 (FYN22_01400) - 310882..311340 (+) 459 WP_148825402.1 type IV pilin protein -
  FYN22_RS01405 (FYN22_01405) rpsP 311486..311743 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  FYN22_RS01410 (FYN22_01410) rimM 311772..312320 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  FYN22_RS01415 (FYN22_01415) trmD 312348..313088 (+) 741 WP_094148539.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FYN22_RS01420 (FYN22_01420) rplS 313229..313603 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  FYN22_RS01425 (FYN22_01425) - 313663..314634 (-) 972 WP_148825403.1 esterase/lipase family protein -

Sequence

Protein


Download         Length: 1294 a.a.        Molecular weight: 139441.55 Da        Isoelectric Point: 5.9267

>NTDB_id=382754 FYN22_RS01390 WP_215900984.1 306461..310345(+) (pilY1) [Acinetobacter johnsonii strain Acsw19]
MQFKKIQMTVLSASLTVLMCSSVTQASDLQIYAMPTAGQKTLVMMVDVSGSMTSGTGVSGVNRIQALRNGLYDVLNSTDP
KLENVVVGLGQFPLGSNSQSGKILVPAVKLGAPARNGQPESAQRQALRTAVRGLSANGGTPTSHGYTEAASYLMGTRTDD
SMVTLQKKTYYQKYRNEKNQKQCATYESGWSTLTYNSEIRFYKACEVWGTTNVSFSNSDYEFRRGNDNERRYYTIKSNSE
DVVVYSNSTYSGFNDSVEESKEITNGITHYKSPLPIPEKRVSCDGQGVYVLSDGEPNASSDENAELQMKVALAQPTTNVI
SNDFFCDVDSSTLTNPLTGGNTGGAWKCMGEFAKKLFSNANPAGVKIQTAFVGFGSSFNNLNSTASNGNDIRNACKLGSR
TKGDSCSYYQADGLTVNPVSYKNHIGGYGNGGFYTGNAAADVTTSVLNFIDNLGTDPLEPLPTGALSVPVDSLNPNGLQN
LGYLRMLEPNPAQPSLLTWAGNLKKYTMKDGVLVDGTTNVFDTTGNFNTNTKNLWGARSLNDGGKVYVGGTYEMLPMPTT
TKTTALRNVMTDVGSATETALVPLITNNTNGSYDQAKSLLKIVKTENTISKEEVLNTFRNQTTLKDFPISIKLKLLNYLG
FKVDTSLEAIPANDDVSYEGSPYTSMGGIIHSFPVQMTYSGRITATGELATDDITLPDGTILKPRNQSVLYGSMEGGLHI
VDAATGVEQMVFVPAEILNNTVASNALVKSGSGTPAPAHGVDAPWIVDSTYRTTGTYPNSQVNAIKMNVYGGLRMGGNSF
YGLDVLNPTEPKLKFRVGSDQADYTRMGQSWSKPVLIDIRYQGVPTRALVVGGGYDACYEDPRFVLSGSSTANDTSSCTA
KTRAKGNAVYVIDAETGKRLFWVSNTGSDANNADLRHSVVSRISTLDRDGDSYVDHLYFGDLGGQVFRVDMDNYQTKSLT
TTDGTTTTSYSNFGVRTVRLANLATTSTGTAITNGDNPRFYEPVTLTIHDEDSKTFIHVGAASGDRSTPLDVAPTIGRDG
LSPYVALTNRPTNRVYGLFDLDFMKEDLITNTALTGNYTSTTTETAVPTKNRLITRNLTLADLLGNPQTSITGSETIYSK
FFSTTAPKHGWYRSLSWSWDTSSTGAEVANNTFRQSGGLKAFEEPIAIGNNLFVPVYDPEGTGVTPQNPCLPRVIGETDR
QQYCLPFGICLTAVGIIDLTREKDSGFRLEETTGGYKNANVVGKGIQGIALANNGGGGSGSNSCGNYTLATLNDGVGNWQ
CTRVLNPTRWFEKR

Nucleotide


Download         Length: 3885 bp        

>NTDB_id=382754 FYN22_RS01390 WP_215900984.1 306461..310345(+) (pilY1) [Acinetobacter johnsonii strain Acsw19]
ATGCAATTCAAAAAAATCCAAATGACTGTACTGAGTGCTTCTTTGACAGTACTGATGTGTAGTAGTGTCACCCAAGCAAG
TGATTTACAGATTTATGCTATGCCTACAGCAGGTCAAAAGACACTTGTTATGATGGTGGACGTTTCAGGGAGTATGACAA
GTGGCACAGGTGTATCTGGCGTAAATCGTATACAAGCGTTAAGAAATGGTTTATATGATGTTTTAAACAGTACTGATCCA
AAACTGGAAAATGTTGTTGTTGGTTTGGGGCAGTTCCCTTTAGGAAGTAATAGCCAGAGTGGGAAAATTTTAGTTCCTGC
GGTTAAGCTTGGAGCCCCCGCAAGAAATGGTCAGCCTGAATCTGCTCAACGTCAGGCATTGCGTACTGCTGTGAGGGGGT
TATCTGCAAATGGCGGTACCCCAACATCTCATGGTTATACAGAAGCTGCTTCATATTTAATGGGCACTCGCACAGATGAT
AGTATGGTGACACTACAAAAGAAAACTTACTATCAAAAATATAGAAATGAAAAAAATCAAAAGCAGTGTGCAACATATGA
GTCAGGTTGGTCGACTTTAACGTATAATTCTGAAATTAGATTTTATAAAGCTTGCGAAGTTTGGGGAACTACTAACGTCT
CGTTTTCAAATAGCGATTATGAATTTAGACGAGGCAATGATAACGAACGTAGGTATTACACAATTAAAAGTAATTCAGAG
GATGTAGTTGTTTATAGTAATTCTACATATAGCGGATTCAATGATTCGGTAGAGGAAAGTAAAGAAATTACAAATGGGAT
CACACATTATAAATCACCTTTGCCAATACCTGAGAAAAGAGTTTCATGTGATGGACAAGGAGTTTATGTTTTATCAGATG
GTGAGCCAAATGCTTCATCAGATGAAAATGCCGAGCTGCAAATGAAAGTAGCTTTAGCACAGCCAACTACTAATGTAATT
TCTAATGATTTTTTCTGCGATGTAGATTCGAGTACTTTAACCAATCCATTAACTGGCGGTAATACTGGTGGTGCGTGGAA
ATGTATGGGGGAGTTTGCTAAAAAATTATTTTCTAATGCCAATCCTGCAGGAGTAAAAATCCAAACAGCATTTGTTGGAT
TTGGTAGTAGTTTTAATAATTTAAATTCGACAGCGTCAAACGGTAATGATATTCGTAATGCTTGTAAACTGGGGTCTAGA
ACTAAAGGGGATTCTTGTTCTTATTATCAGGCAGATGGTTTAACTGTAAATCCTGTAAGTTATAAAAACCATATAGGTGG
ATATGGGAATGGCGGTTTTTATACTGGAAATGCTGCTGCTGATGTAACTACAAGCGTACTTAACTTTATTGATAACTTAG
GAACAGATCCATTAGAACCTCTACCAACAGGTGCTTTGTCGGTGCCGGTAGACTCTTTAAATCCAAATGGCCTACAGAAT
TTGGGTTACTTAAGGATGTTAGAGCCAAACCCAGCACAACCGAGCTTGCTGACTTGGGCTGGAAATTTAAAAAAATACAC
GATGAAAGATGGTGTATTGGTTGATGGAACAACCAATGTTTTTGATACGACAGGTAATTTTAATACAAATACTAAAAATT
TATGGGGTGCACGATCACTGAATGATGGTGGAAAAGTTTATGTTGGAGGGACATATGAAATGTTACCAATGCCAACAACG
ACAAAAACTACAGCTTTAAGAAATGTGATGACGGATGTTGGTAGTGCAACAGAAACTGCATTAGTTCCATTGATTACAAA
CAATACCAATGGAAGTTATGATCAAGCAAAATCACTTTTAAAAATTGTTAAAACTGAAAATACAATTTCAAAAGAAGAAG
TTTTAAATACATTTAGAAATCAAACCACGCTTAAAGATTTTCCAATTTCAATTAAATTAAAACTTTTAAATTATTTAGGT
TTTAAAGTTGATACAAGTTTGGAGGCCATTCCTGCAAATGATGATGTTAGTTATGAAGGGTCTCCCTATACATCTATGGG
AGGAATTATTCATTCATTCCCTGTTCAAATGACTTATTCTGGACGAATCACTGCAACAGGTGAGCTTGCAACAGATGATA
TTACTCTACCAGATGGAACAATTTTAAAGCCACGTAATCAGTCCGTCTTGTATGGTTCGATGGAGGGGGGCTTACATATT
GTAGATGCTGCAACGGGCGTCGAACAAATGGTTTTTGTTCCAGCGGAAATTCTAAATAATACTGTTGCGTCTAATGCGTT
AGTTAAAAGTGGCTCGGGAACACCCGCACCTGCGCATGGTGTTGATGCTCCGTGGATTGTGGACTCAACTTATCGCACGA
CAGGAACGTACCCAAACTCTCAAGTAAATGCTATCAAAATGAATGTTTATGGCGGTTTACGTATGGGGGGAAACAGTTTT
TATGGTTTAGATGTATTAAATCCTACAGAGCCCAAGCTTAAATTCAGAGTGGGGTCGGATCAAGCAGACTATACAAGAAT
GGGGCAGTCATGGTCTAAGCCTGTGTTAATTGATATTCGTTATCAAGGTGTACCGACACGAGCTCTAGTTGTAGGTGGTG
GTTATGATGCTTGTTATGAAGATCCTCGTTTTGTTTTATCCGGTTCAAGTACAGCTAATGATACAAGCAGTTGTACAGCA
AAAACACGTGCCAAAGGTAATGCGGTATATGTCATAGATGCGGAAACTGGTAAACGTCTGTTTTGGGTAAGTAATACAGG
CTCTGATGCGAATAATGCTGATTTAAGACATAGCGTAGTTTCACGTATTAGTACTTTAGATCGAGATGGCGATAGTTATG
TAGATCATTTGTACTTTGGTGATCTTGGTGGACAAGTTTTCCGTGTCGATATGGATAACTATCAAACAAAAAGTTTAACA
ACGACAGATGGAACAACGACAACATCGTATTCAAACTTTGGTGTACGTACAGTTCGTTTGGCAAATTTGGCGACGACTAG
CACGGGTACTGCGATTACAAATGGTGATAATCCTCGTTTCTATGAACCAGTGACCTTAACTATCCATGATGAGGATAGTA
AAACATTTATACATGTTGGTGCTGCTTCTGGGGATCGCAGTACGCCATTAGATGTTGCTCCTACTATAGGACGTGATGGT
TTAAGTCCCTATGTTGCTTTAACAAATCGTCCAACTAATAGAGTTTATGGTTTGTTTGATCTAGATTTTATGAAAGAGGA
TTTGATTACCAATACAGCATTGACTGGAAATTATACTAGTACGACTACAGAAACCGCCGTACCAACAAAAAATCGCCTGA
TTACACGTAACTTAACCTTGGCTGATTTATTAGGTAATCCGCAAACAAGTATTACTGGAAGTGAAACTATATATAGTAAA
TTTTTTAGCACAACAGCGCCAAAACATGGTTGGTATCGTTCGCTTTCGTGGAGTTGGGATACATCTAGTACAGGTGCAGA
AGTAGCAAATAATACATTTAGGCAATCGGGTGGTTTAAAAGCATTTGAAGAACCTATTGCGATTGGCAATAACTTATTTG
TTCCTGTATATGATCCAGAAGGAACTGGTGTAACACCTCAGAATCCTTGTTTGCCTCGCGTAATTGGTGAAACCGATCGA
CAACAGTATTGTTTACCATTCGGTATTTGCTTGACCGCCGTGGGTATTATTGATTTAACTCGTGAGAAAGATTCAGGCTT
TAGACTTGAAGAAACAACAGGTGGATATAAGAATGCTAATGTGGTTGGAAAAGGTATTCAAGGTATAGCACTTGCTAATA
ATGGTGGCGGTGGCAGTGGTTCAAATAGTTGTGGTAATTATACTTTAGCTACATTGAATGATGGTGTGGGTAATTGGCAG
TGTACCCGTGTGTTGAATCCAACGCGTTGGTTTGAGAAAAGGTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(702-951)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

46.331

100

0.483

Multiple sequence alignment