Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   KHP_RS01870 Genome accession   NC_017382
Coordinates   373787..375712 (-) Length   641 a.a.
NCBI ID   WP_001239810.1    Uniprot ID   -
Organism   Helicobacter pylori 51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 368787..380712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHP_RS01860 (KHP_0348) - 368908..371457 (-) 2550 WP_000837204.1 DNA translocase FtsK -
  KHP_RS01865 (KHP_0349) - 371454..373790 (-) 2337 WP_001047478.1 PD-(D/E)XK nuclease family protein -
  KHP_RS01870 (KHP_0350) recP/tkt 373787..375712 (-) 1926 WP_001239810.1 transketolase Machinery gene
  KHP_RS01875 (KHP_0351) - 375759..376601 (-) 843 WP_000931624.1 bifunctional riboflavin kinase/FAD synthetase -
  KHP_RS01880 (KHP_0352) - 376567..377274 (-) 708 WP_001235193.1 23S rRNA (cytidine-2'-O)-methyltransferase TlyA -
  KHP_RS01885 (KHP_0353) - 377274..377789 (-) 516 WP_000523557.1 hypothetical protein -
  KHP_RS01890 (KHP_0354) pyrB 377856..378779 (+) 924 WP_001124571.1 aspartate carbamoyltransferase -
  KHP_RS01895 (KHP_0355) hofB 379075..380514 (+) 1440 WP_000798594.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70434.72 Da        Isoelectric Point: 6.6515

>NTDB_id=38274 KHP_RS01870 WP_001239810.1 373787..375712(-) (recP/tkt) [Helicobacter pylori 51]
MRLSNADLERLKGMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLDKEAISHKVYCLCGDGD
LQEGISYESASLAGHFNLNNLIVIYDSNQISIEGAINISFSEQVKMRFLAQNWEVLECDGHDYQAIHNALEKAKKSTKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLSPKAKE
KIHALKDFDFSAINYPIFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFVPFCATFFVFSDYLMPSIRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPC
DAFENTACMQVALSLSAPSGLILSRQNLPVLDEVSKEQVLKGAYVKYDAKNPAITLVASGSEVSLALESAKMLERENIPT
QVVSAPCFDLLVEQDESYLKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENITTQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=38274 KHP_RS01870 WP_001239810.1 373787..375712(-) (recP/tkt) [Helicobacter pylori 51]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAGGCATGGCCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACTTAAACCTAA
ACCCCACCAACCCTAAATGGCTCAACAGGGACAGACTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGCCTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACTGAAGGCATTGAGATCACGACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAGACAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGCGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCATTTCAATCTAAACAACCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTTAAGATGCGGTTTTTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAAAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGATTATTGGTAAGGGGGCTATTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCACCCCTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAGCAAAAGAA
AAGATCCATGCGTTAAAGGATTTTGATTTTAGCGCCATCAATTACCCCATTTTCAAAAAAGGCGAATCTTTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCGT
CTAATAACACGCAATTAAAACACTCTGGCGATTTCCCTTTAGGGCAAAACTTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCAGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTACTT
GATGCCTAGCATTCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG
AAGACGGGGCGACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCGTTCAGACCCTGC
GACGCTTTTGAAAATACCGCTTGCATGCAAGTGGCGTTAAGTTTGAGCGCTCCTAGCGGGCTTATTTTATCGCGCCAGAA
TTTACCCGTGCTTGATGAGGTTTCTAAAGAGCAGGTCTTAAAAGGCGCGTATGTTAAATATGATGCTAAAAATCCCGCTA
TCACGCTGGTTGCGAGCGGGAGTGAAGTTTCTTTGGCTTTAGAGAGCGCTAAAATGTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGTGCACCATGCTTTGATTTATTGGTGGAACAAGATGAAAGCTATCTTAAAGAGCTTTTTAAGGGTAAGGT
TTTAGTGATTGAAGCGAGTCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGTATGGATTCTTTTGGGAGTT
CAGCAAAGGGCGATAAACTCTTTGAAAAATTCGGCTTCAGCGTTGAAAACATCACCACTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-577)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(14-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.167

100

0.418

Multiple sequence alignment