Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HFV09_RS02435 Genome accession   NZ_CP051138
Coordinates   480537..481145 (-) Length   202 a.a.
NCBI ID   WP_002983622.1    Uniprot ID   P65998
Organism   Streptococcus pyogenes strain 4063-05     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 475537..486145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFV09_RS02420 nadE 475572..476396 (+) 825 WP_021299057.1 ammonia-dependent NAD(+) synthetase -
  HFV09_RS02425 pepC 476581..477918 (+) 1338 WP_011528864.1 aminopeptidase C -
  HFV09_RS02430 pbp1a 478385..480550 (-) 2166 WP_009880659.1 penicillin-binding protein PBP1A -
  HFV09_RS02435 recU 480537..481145 (-) 609 WP_002983622.1 Holliday junction resolvase RecU Machinery gene
  HFV09_RS02440 - 481226..481741 (+) 516 WP_011285056.1 DUF1273 domain-containing protein -
  HFV09_RS02445 gpsB 481863..482189 (+) 327 WP_002983626.1 cell division regulator GpsB -
  HFV09_RS02455 - 482634..483788 (+) 1155 WP_011528863.1 class I SAM-dependent RNA methyltransferase -
  HFV09_RS02460 - 483802..485271 (+) 1470 WP_002983629.1 cell division site-positioning protein MapZ family protein -
  HFV09_RS02465 - 485416..485898 (-) 483 WP_021299075.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23356.93 Da        Isoelectric Point: 9.8725

>NTDB_id=382687 HFV09_RS02435 WP_002983622.1 480537..481145(-) (recU) [Streptococcus pyogenes strain 4063-05]
MVNYPHNLIRQKVSSVQKQTKQNKVDFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYF
RQASTTDYCGVYKGHYVDFEAKETRQKTAMPMKNFHLHQIEHMACVLHQKGICFVLLHFSTLKETYYLPAQALISFYQID
NGSKSMPIDYIRKNGFKVAFGAFPQVPYLNIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=382687 HFV09_RS02435 WP_002983622.1 480537..481145(-) (recU) [Streptococcus pyogenes strain 4063-05]
ATGGTTAATTATCCTCATAATCTTATTCGACAAAAAGTAAGTTCCGTTCAAAAGCAAACAAAGCAAAATAAGGTGGACTT
CGCCAATAGAGGTATGTCCTTTGAAGCTGCTATCAACGCGACAAATGATTATTATTTATCTCGTCAAATAGCTGTCATTC
ACAAAAAACCTACTCCTGTCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGGGCAAAAATCGTTGAAGCGTACTTT
AGACAAGCTTCAACGACTGACTATTGCGGCGTTTATAAAGGACATTATGTTGATTTTGAAGCAAAAGAAACCAGGCAAAA
AACAGCTATGCCCATGAAAAATTTCCATTTACATCAGATTGAACATATGGCTTGCGTTTTACATCAAAAAGGAATCTGCT
TTGTCCTTCTTCACTTTTCCACACTGAAGGAGACTTACTACCTACCTGCTCAAGCCTTGATTTCATTTTATCAGATAGAT
AATGGCAGTAAATCGATGCCCATTGATTATATCAGAAAAAATGGCTTTAAGGTAGCATTCGGAGCCTTTCCACAAGTCCC
TTATTTAAACATAATTGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65998

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5