Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GRB95_RS04955 Genome accession   NZ_CP051004
Coordinates   935980..937050 (-) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae 515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930980..942050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS04935 (GRB95_04935) - 931515..932267 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  GRB95_RS04940 (GRB95_04940) - 932269..934224 (+) 1956 WP_000499547.1 FtsX-like permease family protein -
  GRB95_RS04945 (GRB95_04945) braR 934334..935002 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  GRB95_RS04950 (GRB95_04950) - 934999..935937 (+) 939 WP_000620981.1 sensor histidine kinase -
  GRB95_RS04955 (GRB95_04955) xerS 935980..937050 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  GRB95_RS04960 (GRB95_04960) - 937503..939166 (+) 1664 Protein_896 peptide ABC transporter substrate-binding protein -
  GRB95_RS04965 (GRB95_04965) - 939199..939972 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  GRB95_RS04970 (GRB95_04970) - 939962..940648 (-) 687 WP_000280305.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=382607 GRB95_RS04955 WP_000817930.1 935980..937050(-) (xerS) [Streptococcus agalactiae 515]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=382607 GRB95_RS04955 WP_000817930.1 935980..937050(-) (xerS) [Streptococcus agalactiae 515]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATACTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAAAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837