Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GRB95_RS04575 Genome accession   NZ_CP051004
Coordinates   845411..848644 (+) Length   1077 a.a.
NCBI ID   WP_000772292.1    Uniprot ID   -
Organism   Streptococcus agalactiae 515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 840411..853644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS04560 (GRB95_04560) - 841282..841803 (+) 522 WP_000078403.1 GNAT family N-acetyltransferase -
  GRB95_RS04565 (GRB95_04565) pheT 841857..844262 (+) 2406 WP_000961585.1 phenylalanine--tRNA ligase subunit beta -
  GRB95_RS04570 (GRB95_04570) - 844331..845233 (-) 903 WP_000686767.1 neutral zinc metallopeptidase -
  GRB95_RS04575 (GRB95_04575) rexB 845411..848644 (+) 3234 WP_000772292.1 ATP-dependent nuclease subunit B Machinery gene
  GRB95_RS04580 (GRB95_04580) rexA 848634..852257 (+) 3624 WP_000143226.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GRB95_RS04585 (GRB95_04585) - 852270..853187 (+) 918 WP_000634649.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 123926.72 Da        Isoelectric Point: 5.2254

>NTDB_id=382604 GRB95_RS04575 WP_000772292.1 845411..848644(+) (rexB) [Streptococcus agalactiae 515]
MKLLYTDINHDMTEILVNQAAHAAEAGWRIFYIAPNSLSFEKERAVLENLPQEASFAITITRFAQLARYFTLNQPNQKES
LNDIGLAMIFYRALASFEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYLHSPEKFEDLLAIFLVVSDLLRE
GEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSLSSRCQEIIIGAYASQKAYKANFTNGNIYSAG
VDFLRYLATTFQTKPEFILSKWESKSGFEMISKNIEGKHDFTNSSHILDDTAKDCITIWECINQKDEVEHVARAIRQKLY
QGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQ
DDLDYFEAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDGIKTLNQFMFFLTQVGLSDNLS
RLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQF
VYALGMTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQM
SPYLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEKQTFWSVAVRYLRRQLTSKGIEIPII
TDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIE
SFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIKINGIIDRID
RLSDGSLGVVDYKSSAQKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPPIFGAMYLHMQEPKQDLSKIKNLDDLVTKNH
QALTYKGLFSEAEKEFLANGKYHLKDSLYSEAEIAILQAHNQLLYKKASETIKSGKFLINPYTEDAKTVDGDQFKSITGF
EADRHMARARALYKLPAKEKRQGFLTLMQQEEENDDL

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=382604 GRB95_RS04575 WP_000772292.1 845411..848644(+) (rexB) [Streptococcus agalactiae 515]
ATGAAATTACTTTATACTGATATTAATCATGATATGACAGAAATCTTAGTCAATCAGGCCGCGCATGCTGCTGAAGCTGG
ATGGCGTATTTTTTATATTGCTCCAAACTCTTTATCTTTTGAAAAAGAGCGTGCAGTATTAGAGAACCTTCCTCAAGAAG
CCTCTTTTGCTATTACAATTACTCGCTTTGCTCAATTGGCACGTTATTTTACTTTAAACCAGCCTAATCAAAAAGAAAGT
TTAAACGATATTGGATTAGCAATGATCTTTTATCGTGCTTTAGCAAGTTTTGAAGATGGACAATTAAAAGTTTTTGGACG
ATTGAAGCAAGATGCTTCCTTTATCAGTCAATTGGTAGACCTATACAAAGAATTGCAGACAGCAAATCTGAGTATTTTAG
ATTTAAAATATTTACATTCTCCTGAAAAATTTGAAGATTTATTAGCTATTTTTCTAGTGGTTTCAGATCTTTTAAGAGAA
GGAGAATACGACAATCAATCTAAAATTGCCTTTTTTACAGAACAAGTAAGGTCAGGCCAGCTAGATGTGGATTTAAAGAA
CACTATCCTTATAGTCGATGGTTTTACCCGTTTCTCAGCTGAAGAAGAAGCTTTAATTAAAAGTCTGAGTTCACGTTGTC
AAGAGATTATCATCGGAGCTTATGCTAGCCAAAAAGCGTATAAGGCTAACTTTACTAATGGAAATATTTATTCTGCAGGG
GTTGATTTTTTAAGATATCTAGCAACGACATTTCAAACAAAACCAGAATTTATCTTGTCTAAGTGGGAAAGTAAGTCTGG
TTTTGAAATGATTTCGAAAAATATCGAAGGTAAACATGATTTTACAAATAGTAGTCACATTTTAGACGACACTGCTAAAG
ATTGTATAACAATTTGGGAGTGCATTAATCAAAAAGATGAAGTGGAACATGTGGCTAGAGCTATACGTCAGAAACTTTAT
CAGGGATATCGCTACAAAGATATTTTAGTTTTACTAGGAGATGTAGATAGTTATAAACTACAATTAAGCAAGATTTTTGA
GCAGTATGATATTCCTTATTATTTCGGTAAAGCTGAAACAATGGCTGCGCACCCTTTAGTTCATTTTATGGATTCCTTGT
CTCGAATAAAACGTTATCGATTTAGAGCTGAAGATGTTTTAAATCTTTTTAAGACAGGTATTTATGGAGAGATTAGTCAA
GATGATTTAGATTATTTTGAGGCTTATATCTCATATGCAGACATTAAAGGTCCTAAGAAGTTCTTTACAGATTTTGTTGT
GGGGGCTAAAAAATTTGATTTAGGGCGTCTTAACACTATTCGTCAGTCCCTCCTTGCTCCACTGGAAAGTTTTGTTAAAA
CGAAAAAACAAGACGGTATAAAAACACTCAACCAATTCATGTTTTTCCTTACTCAGGTAGGTTTGAGTGACAATTTATCG
CGATTAGTTGGTCAAATGTCTGAAAATGAACAAGAAAAACATCAAGAAGTTTGGAAAACATTTACAGATATTTTAGAGCA
GTTTCAAACAATATTTGGTCAAGAAAAATTAAATTTAGATGAATTTTTATCGTTATTAAATTCAGGTATGATGCAAGCCG
AGTATCGTATGGTCCCTGCTACTGTTGATGTGGTTACTGTTAAGTCTTACGACTTGGTAGAACCACATAGTAATCAATTT
GTCTATGCCCTAGGCATGACACAATCACATTTTCCAAAGATTGCTCAAAACAAATCTTTAATATCTGATATTGAACGTCA
GCTTATAAATGATGCCAATGACACTGATGGTCATTTTGACATTATGACGCGAGAAAATTTGAAGAAAAACCATTTTGCTG
CTCTCTCTCTTTTTAATGCTGCTAAACAAGCATTAGTGTTGACTATACCACAATTATTGAATGAGTCTGAAGATCAGATG
TCACCATATCTTATCGAACTAAGAGATATAGGTGTTCCTTTTAATCATAAAGGACGCCAATCGTTAAAAGAAGAAGCTGA
TAATATTGGGAATTACAAAGCTTTATTATCGCGTGTTGTTGACTTGTATCGCTCTGCTATTGACAAAGAGATGACTAAAG
AAAAACAAACTTTTTGGTCAGTTGCTGTTCGTTATTTGCGTCGTCAATTAACTTCTAAAGGGATTGAGATACCAATAATT
ACAGATAGTCTTGATACTGTGACAGTTTCATCAGATGTGATGACCAGACGCTTCCCAGAAGATGACCCACTTAAATTATC
CTCATCTGCTTTGACAACTTTTTATAATAATCAATATAAGTATTTTTTACAATATGTGTTAGGTTTGGAAGAACAAGACT
CAATTCATCCAGATATGCGGCACCATGGAACGTACCTTCATCGTGTTTTTGAAATTCTGATGAAAAACCAAGGGATAGAA
TCTTTTGAAGAGAAACTCAACTCTGCAATTAATAAAACCAATCAAGAAGATGTTTTCAAATCCTTGTATTCAGAAGATGC
AGAAAGTCGTTATTCTTTAGAAATTTTAGAAGATATCGCGCGTGCAACTGCAACCATATTACGACAAGATAGTCAGATGA
CTGTTGAAAGTGAAGAAGAACGATTTGAACTAATGATTGATAATACTATAAAAATTAACGGTATTATTGACCGTATCGAT
CGTTTATCTGATGGTTCTTTGGGTGTCGTGGACTATAAATCAAGCGCTCAAAAATTCGATATCCAAAAATTTTATAACGG
TCTAAGTCCACAATTAGTTACCTACATTGATGCTATCAGTCGTGACAAGGAGGTTGAACAAAAACCACCGATTTTTGGAG
CTATGTATTTACATATGCAAGAACCTAAACAAGACTTGTCTAAAATTAAAAATTTAGATGATTTAGTAACAAAAAATCAT
CAAGCTTTAACTTATAAAGGATTATTTTCAGAAGCTGAAAAAGAATTTTTAGCAAATGGGAAATACCATCTCAAAGATTC
CCTTTATTCAGAGGCTGAAATTGCTATTTTACAAGCACATAACCAATTGCTTTACAAAAAAGCATCTGAGACTATTAAGT
CAGGTAAGTTTTTGATCAATCCATATACAGAAGATGCTAAAACAGTTGACGGTGATCAGTTTAAGAGTATTACGGGGTTC
GAGGCGGATAGGCATATGGCGCGTGCCAGAGCGCTTTATAAATTACCTGCTAAGGAAAAACGTCAAGGTTTCTTAACATT
AATGCAGCAAGAGGAGGAAAATGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.123

99.907

0.431

Multiple sequence alignment