Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GRB95_RS01785 Genome accession   NZ_CP051004
Coordinates   313623..314222 (-) Length   199 a.a.
NCBI ID   WP_000248791.1    Uniprot ID   -
Organism   Streptococcus agalactiae 515     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 308623..319222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS01770 (GRB95_01770) nadE 309081..309902 (+) 822 WP_000174853.1 ammonia-dependent NAD(+) synthetase -
  GRB95_RS01775 (GRB95_01775) pepC 310015..311349 (+) 1335 WP_001293157.1 aminopeptidase C -
  GRB95_RS01780 (GRB95_01780) pbp1a 311396..313636 (-) 2241 WP_000628380.1 penicillin-binding protein PBP1A -
  GRB95_RS01785 (GRB95_01785) recU 313623..314222 (-) 600 WP_000248791.1 Holliday junction resolvase RecU Machinery gene
  GRB95_RS01790 (GRB95_01790) - 314297..314815 (+) 519 WP_000843099.1 DUF1273 domain-containing protein -
  GRB95_RS01795 (GRB95_01795) gpsB 314936..315268 (+) 333 WP_000146543.1 cell division regulator GpsB -
  GRB95_RS01805 (GRB95_01805) - 315738..316892 (+) 1155 WP_000664850.1 class I SAM-dependent RNA methyltransferase -
  GRB95_RS01810 (GRB95_01810) - 316905..318368 (+) 1464 WP_001287863.1 cell division site-positioning protein MapZ family protein -
  GRB95_RS01815 (GRB95_01815) - 318593..319075 (-) 483 WP_000159885.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23124.73 Da        Isoelectric Point: 9.8314

>NTDB_id=382569 GRB95_RS01785 WP_000248791.1 313623..314222(-) (recU) [Streptococcus agalactiae 515]
MVNYPHQLIRKTTVTKSKKKKIDFANRGMSFEAAINATNDYYLSHELAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMANVLQQKGICFVLLHFSTLKETYLLPAHELISFYQIDKGN
KSMPIDYIRKNGFFVKESAFPQVPYLDIIEEKLLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=382569 GRB95_RS01785 WP_000248791.1 313623..314222(-) (recU) [Streptococcus agalactiae 515]
ATGGTTAACTATCCACATCAGCTTATTCGGAAAACAACAGTTACAAAATCAAAGAAAAAGAAAATCGATTTTGCCAACCG
TGGTATGTCATTTGAAGCTGCTATCAATGCAACCAATGACTACTATTTGTCTCACGAATTAGCTGTCATTCATAAGAAAC
CAACGCCAGTACAAATCGTCAAGGTAGATTATCCTAAACGTAGTCGTGCTAAGATTGTAGAAGCTTATTTTAGACAAGCT
TCTACTACTGATTATTCTGGTGTTTACAAAGGTTACTATATTGACTTTGAAGCCAAAGAAACCCGGCAGAAAACTGCTAT
GCCTATGAAAAATTTTCATGCTCACCAAATAGAGCACATGGCAAATGTATTACAGCAAAAAGGGATTTGCTTTGTCTTGC
TTCATTTTTCCACACTTAAGGAAACCTATCTACTCCCTGCTCATGAGTTAATTTCATTTTATCAGATTGATAAAGGCAAT
AAATCAATGCCTATTGATTATATCAGAAAAAATGGATTTTTCGTAAAGGAGAGTGCCTTTCCTCAAGTCCCTTACTTAGA
TATTATTGAAGAAAAATTATTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.995

0.477