Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PPE_RS19900 Genome accession   NC_014483
Coordinates   4452298..4453251 (-) Length   317 a.a.
NCBI ID   WP_013312014.1    Uniprot ID   -
Organism   Paenibacillus polymyxa E681     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4447298..4458251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPE_RS19875 (PPE_04099) - 4447769..4448680 (-) 912 WP_013312009.1 aldo/keto reductase -
  PPE_RS19880 (PPE_04100) - 4448838..4449581 (-) 744 WP_043882361.1 alpha/beta hydrolase-fold protein -
  PPE_RS19885 (PPE_04101) - 4449613..4450593 (-) 981 WP_013312011.1 siderophore ABC transporter substrate-binding protein -
  PPE_RS19890 (PPE_04102) - 4450606..4451364 (-) 759 WP_013312012.1 ABC transporter ATP-binding protein -
  PPE_RS19895 (PPE_04103) - 4451358..4452308 (-) 951 WP_013312013.1 iron chelate uptake ABC transporter family permease subunit -
  PPE_RS19900 (PPE_04104) ceuB 4452298..4453251 (-) 954 WP_013312014.1 ABC transporter permease Machinery gene
  PPE_RS19905 (PPE_04105) - 4453578..4454255 (+) 678 WP_013312015.1 response regulator transcription factor -
  PPE_RS19910 (PPE_04106) - 4454257..4455174 (+) 918 WP_013312016.1 HAMP domain-containing sensor histidine kinase -
  PPE_RS19915 (PPE_04107) - 4455283..4455960 (+) 678 WP_013312017.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34729.66 Da        Isoelectric Point: 9.9012

>NTDB_id=38256 PPE_RS19900 WP_013312014.1 4452298..4453251(-) (ceuB) [Paenibacillus polymyxa E681]
MKLRYLILAFLVLAFASVFIGVHDVNPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALAGTLIFTKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=38256 PPE_RS19900 WP_013312014.1 4452298..4453251(-) (ceuB) [Paenibacillus polymyxa E681]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTCGTACTGGCTTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAAATCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTGCTCCTGATTAGCAGATTCCCACGATTGATCAGTATTATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAATCGATTTGTATCGCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGCAGGAACACTGATTTTCACGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCACTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGCGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTTGGGACG
ATTCCCTTTTTGGGGCTAGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTAAAAAAAAGTCTGGCCCATAC
AGCGATCCTGGGTGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTCATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511

Multiple sequence alignment