Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BY40_RS22500 Genome accession   NZ_CP051001
Coordinates   4557132..4557647 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O157:H16 str. 98-3133     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4552132..4562647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BY40_RS22475 ygaZ 4552531..4553268 (+) 738 WP_000445649.1 L-valine exporter subunit YgaZ -
  BY40_RS22480 ygaH 4553258..4553593 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BY40_RS22485 emrR 4553684..4554214 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BY40_RS22490 emrA 4554341..4555513 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BY40_RS22495 emrB 4555530..4557068 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BY40_RS22500 luxS 4557132..4557647 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BY40_RS22505 gshA 4557797..4559353 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BY40_RS22510 yqaA 4559426..4559854 (-) 429 WP_001287454.1 YqaA family protein -
  BY40_RS22515 yqaB 4559851..4560417 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BY40_RS22545 csrA 4561875..4562060 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=382540 BY40_RS22500 WP_001130211.1 4557132..4557647(-) (luxS) [Escherichia coli O157:H16 str. 98-3133]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=382540 BY40_RS22500 WP_001130211.1 4557132..4557647(-) (luxS) [Escherichia coli O157:H16 str. 98-3133]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731