Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HP2018_RS05655 Genome accession   NC_017381
Coordinates   1175757..1176806 (+) Length   349 a.a.
NCBI ID   WP_000115491.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170757..1181806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS05635 (hp2018_1148) - 1171034..1171777 (+) 744 WP_014534084.1 carbonic anhydrase -
  HP2018_RS05640 (hp2018_1149) - 1172017..1172907 (-) 891 WP_001121711.1 DUF874 family protein -
  HP2018_RS05645 (hp2018_1151) asd 1173340..1174380 (-) 1041 WP_000860967.1 aspartate-semialdehyde dehydrogenase -
  HP2018_RS05650 (hp2018_1152) hisS 1174367..1175695 (-) 1329 WP_000632489.1 histidine--tRNA ligase -
  HP2018_RS05655 (hp2018_1153) waaF 1175757..1176806 (+) 1050 WP_000115491.1 lipopolysaccharide heptosyltransferase II Regulator
  HP2018_RS05665 (hp2018_1155) fusA 1177602..1179680 (-) 2079 WP_000101857.1 elongation factor G -
  HP2018_RS05670 (hp2018_1156) rpsG 1179692..1180159 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  HP2018_RS05675 (hp2018_1157) rpsL 1180175..1180582 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39461.23 Da        Isoelectric Point: 9.7893

>NTDB_id=38254 HP2018_RS05655 WP_000115491.1 1175757..1176806(+) (waaF) [Helicobacter pylori 2018]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSFFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDTIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHAAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHILLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=38254 HP2018_RS05655 WP_000115491.1 1175757..1176806(+) (waaF) [Helicobacter pylori 2018]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATATTAGTAGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGATGACACCAAAAAATCCTTTTTTAGGCTATTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTTTTCCTAAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCAGCCGCTAGCACGAAAACCCCCCTAATCGCTCTTTTTGGTCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCTTGCAAAAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.235

97.421

0.372

Multiple sequence alignment