Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BY40_RS18755 Genome accession   NZ_CP051001
Coordinates   3775661..3777088 (+) Length   475 a.a.
NCBI ID   WP_000980551.1    Uniprot ID   -
Organism   Escherichia coli O157:H16 str. 98-3133     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3770661..3782088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BY40_RS18715 yeeW 3770845..3771039 (+) 195 WP_000988601.1 DUF5983 family protein -
  BY40_RS18720 - 3771073..3771165 (+) 93 Protein_3695 DUF957 domain-containing protein -
  BY40_RS18725 - 3771454..3771591 (-) 138 Protein_3696 transposase domain-containing protein -
  BY40_RS18730 - 3771654..3771836 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BY40_RS18735 tmaR 3771937..3772266 (-) 330 WP_000450409.1 DUF496 family protein -
  BY40_RS18740 yeeA 3772438..3773496 (-) 1059 WP_001200894.1 FUSC family protein -
  BY40_RS18745 sbmC 3773694..3774167 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  BY40_RS18750 dacD 3774286..3775452 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BY40_RS18755 sbcB 3775661..3777088 (+) 1428 WP_000980551.1 exodeoxyribonuclease I Machinery gene
  BY40_RS18760 plaP 3777162..3778520 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  BY40_RS18765 yoeI 3778510..3778572 (-) 63 WP_010723108.1 membrane protein YoeI -
  BY40_RS18770 yeeY 3778787..3779716 (-) 930 WP_000803352.1 LysR substrate-binding domain-containing protein -
  BY40_RS18775 yeeZ 3779762..3780586 (-) 825 WP_000754746.1 SDR family oxidoreductase -
  BY40_RS18780 yoeB 3780669..3780923 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BY40_RS18785 yefM 3780920..3781171 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  BY40_RS18790 hisL 3781454..3781504 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.77 Da        Isoelectric Point: 5.3476

>NTDB_id=382529 BY40_RS18755 WP_000980551.1 3775661..3777088(+) (sbcB) [Escherichia coli O157:H16 str. 98-3133]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDD
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=382529 BY40_RS18755 WP_000980551.1 3775661..3777088(+) (sbcB) [Escherichia coli O157:H16 str. 98-3133]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGAT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCTGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-191)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581