Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   BY40_RS02825 Genome accession   NZ_CP051001
Coordinates   575960..576943 (-) Length   327 a.a.
NCBI ID   WP_001196494.1    Uniprot ID   -
Organism   Escherichia coli O157:H16 str. 98-3133     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 570960..581943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BY40_RS02800 bcsF 571121..571312 (+) 192 WP_000988308.1 cellulose biosynthesis protein BcsF -
  BY40_RS02805 bcsG 571309..572988 (+) 1680 WP_000191622.1 cellulose biosynthesis protein BcsG -
  BY40_RS02810 ldrD 573075..573182 (-) 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD -
  BY40_RS02815 yhjV 573658..574929 (+) 1272 WP_001295225.1 aromatic amino acid transport family protein -
  BY40_RS02820 dppF 574959..575963 (-) 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
  BY40_RS02825 amiE 575960..576943 (-) 984 WP_001196494.1 dipeptide ABC transporter ATP-binding protein Regulator
  BY40_RS02830 dppC 576954..577856 (-) 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
  BY40_RS02835 dppB 577866..578885 (-) 1020 WP_000938855.1 dipeptide ABC transporter permease DppB -
  BY40_RS02840 dppA 579193..580800 (-) 1608 WP_001222883.1 dipeptide ABC transporter substrate-binding protein DppA -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35874.39 Da        Isoelectric Point: 6.5814

>NTDB_id=382477 BY40_RS02825 WP_001196494.1 575960..576943(-) (amiE) [Escherichia coli O157:H16 str. 98-3133]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGSNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide


Download         Length: 984 bp        

>NTDB_id=382477 BY40_RS02825 WP_001196494.1 575960..576943(-) (amiE) [Escherichia coli O157:H16 str. 98-3133]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCAGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(24-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

43.302

98.165

0.425
  amiE Streptococcus thermophilus LMG 18311

42.991

98.165

0.422
  amiE Streptococcus thermophilus LMD-9

42.991

98.165

0.422
  oppD Streptococcus mutans UA159

41.379

97.554

0.404