Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HP2018_RS03775 Genome accession   NC_017381
Coordinates   791194..792714 (-) Length   506 a.a.
NCBI ID   WP_000611111.1    Uniprot ID   -
Organism   Helicobacter pylori 2018     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786194..797714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2018_RS03760 (hp2018_0771) hofF 786598..788097 (+) 1500 WP_001108174.1 outer membrane beta-barrel protein HofF -
  HP2018_RS03765 (hp2018_0772) - 788374..789036 (-) 663 WP_000944901.1 hypothetical protein -
  HP2018_RS03770 (hp2018_0773) - 789109..791169 (-) 2061 WP_001158800.1 heavy metal translocating P-type ATPase -
  HP2018_RS03775 (hp2018_0774) comM 791194..792714 (-) 1521 WP_000611111.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HP2018_RS03780 (hp2018_0775) def 792720..793244 (-) 525 WP_001185868.1 peptide deformylase -
  HP2018_RS03785 (hp2018_0776) clpP 793249..793836 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HP2018_RS03790 (hp2018_0777) tig 793857..795212 (-) 1356 WP_001047796.1 trigger factor -
  HP2018_RS03795 (hp2018_0778) - 795325..796161 (-) 837 WP_001037713.1 outer membrane protein -
  HP2018_RS03800 (hp2018_0779) hpaA 796190..796972 (-) 783 WP_000855934.1 flagellar sheath lipoprotein HpaA -
  HP2018_RS03805 (hp2018_0780) moaC 797091..797567 (-) 477 WP_001131518.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57241.29 Da        Isoelectric Point: 8.3899

>NTDB_id=38247 HP2018_RS03775 WP_000611111.1 791194..792714(-) (comM) [Helicobacter pylori 2018]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREIVQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=38247 HP2018_RS03775 WP_000611111.1 791194..792714(-) (comM) [Helicobacter pylori 2018]
ATGATTAACACGATATTTTGCACGACCATGCAAAGGGGGGTGGCTGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTAGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCTCCTCTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAACCCTAACATTTTCCCCATGCTCTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCACCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGTTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCCGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCCGGCGAAATCGCACTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATTTCAAGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ATAGGGAAATTGTGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAGCAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment