Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FYA23_RS08095 Genome accession   NZ_CP043225
Coordinates   1710906..1711532 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain PG20180056     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705906..1716532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA23_RS08075 (FYA23_08075) - 1706305..1708065 (-) 1761 WP_017384808.1 Lon protease family protein -
  FYA23_RS08080 (FYA23_08080) matP 1708252..1708704 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  FYA23_RS08085 (FYA23_08085) ompA 1708770..1709822 (-) 1053 WP_017694761.1 porin OmpA -
  FYA23_RS08090 (FYA23_08090) sulA 1710179..1710688 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  FYA23_RS08095 (FYA23_08095) sxy/tfoX 1710906..1711532 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  FYA23_RS08100 (FYA23_08100) yccS 1711489..1713651 (-) 2163 WP_047719338.1 YccS family putative transporter -
  FYA23_RS08105 (FYA23_08105) - 1713670..1714116 (-) 447 WP_003858149.1 YccF domain-containing protein -
  FYA23_RS08110 (FYA23_08110) helD 1714239..1716293 (+) 2055 WP_047719339.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=382462 FYA23_RS08095 WP_017384804.1 1710906..1711532(+) (sxy/tfoX) [Enterobacter hormaechei strain PG20180056]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=382462 FYA23_RS08095 WP_017384804.1 1710906..1711532(+) (sxy/tfoX) [Enterobacter hormaechei strain PG20180056]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment