Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   P411_RS20770 Genome accession   NZ_CP050998
Coordinates   4127165..4127680 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O39:NM str. F8704-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4122165..4132680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P411_RS20725 csrA 4122756..4122941 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  P411_RS20755 yqaB 4124395..4124961 (+) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  P411_RS20760 yqaA 4124958..4125386 (+) 429 WP_001287457.1 YqaA family protein -
  P411_RS20765 gshA 4125459..4127015 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  P411_RS20770 luxS 4127165..4127680 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  P411_RS20775 emrB 4127744..4129282 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  P411_RS20780 emrA 4129299..4130471 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  P411_RS20785 emrR 4130598..4131128 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  P411_RS20790 ygaH 4131219..4131554 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  P411_RS20795 ygaZ 4131544..4132281 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=382447 P411_RS20770 WP_001130211.1 4127165..4127680(+) (luxS) [Escherichia coli O39:NM str. F8704-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=382447 P411_RS20770 WP_001130211.1 4127165..4127680(+) (luxS) [Escherichia coli O39:NM str. F8704-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731