Detailed information NTG0382444

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P411_RS20465
• Genome accession: NZ_CP050998
• Coordinates: 4069947..4070939 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O39:NM str. F8704-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4064947..4075939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P411_RS20435	ispD	4065008..4065718 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P411_RS20440	ispF	4065718..4066197 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P411_RS20445	truD	4066194..4067243 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
P411_RS20450	surE	4067224..4067985 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
P411_RS20455	pcm	4067979..4068605 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
P411_RS20460	nlpD	4068790..4069884 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
P411_RS20465	rpoS	4069947..4070939 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
P411_RS20470	-	4071060..4071467 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
P411_RS20475	-	4071614..4072207 (+)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
P411_RS20480	-	4072207..4073634 (+)	1428	WP_000863221.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
P411_RS20485	-	4073645..4073881 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
P411_RS20490	ygbN	4073921..4075285 (-)	1365	WP_000104430.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=382444 P411_RS20465 WP_000081550.1 4069947..4070939(+) (rpoS) [Escherichia coli O39:NM str. F8704-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=382444 P411_RS20465 WP_000081550.1 4069947..4070939(+) (rpoS) [Escherichia coli O39:NM str. F8704-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715