Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P411_RS09395 Genome accession   NZ_CP050998
Coordinates   1775079..1775684 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O39:NM str. F8704-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1770079..1780684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P411_RS09365 rsmS 1770784..1770945 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  P411_RS09370 priC 1770959..1771486 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  P411_RS09375 ybaN 1771556..1771933 (+) 378 WP_001188905.1 DUF454 family protein -
  P411_RS09380 apt 1772086..1772637 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P411_RS09385 dnaX 1772766..1774697 (+) 1932 WP_000122007.1 DNA polymerase III subunit gamma/tau -
  P411_RS09390 ybaB 1774750..1775079 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P411_RS09395 recR 1775079..1775684 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P411_RS09400 htpG 1775794..1777668 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  P411_RS09405 adk 1777849..1778493 (+) 645 WP_001220233.1 adenylate kinase -
  P411_RS09410 hemH 1778729..1779691 (+) 963 WP_001250125.1 ferrochelatase -
  P411_RS09415 aes 1779688..1780647 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=382402 P411_RS09395 WP_001195025.1 1775079..1775684(+) (recR) [Escherichia coli O39:NM str. F8704-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=382402 P411_RS09395 WP_001195025.1 1775079..1775684(+) (recR) [Escherichia coli O39:NM str. F8704-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443