Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HEP85_RS29235 Genome accession   NZ_CP050975
Coordinates   6667039..6667815 (-) Length   258 a.a.
NCBI ID   WP_168530554.1    Uniprot ID   A0ABW3XD93
Organism   Streptomyces sp. RPA4-2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6662039..6672815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP85_RS29225 (HEP85_29485) - 6662711..6664588 (+) 1878 WP_168530552.1 IucA/IucC family siderophore biosynthesis protein -
  HEP85_RS29230 (HEP85_29490) - 6664701..6666734 (+) 2034 WP_168530553.1 ATP-dependent DNA helicase -
  HEP85_RS29235 (HEP85_29495) dinR/lexA 6667039..6667815 (-) 777 WP_168530554.1 transcriptional repressor LexA Regulator
  HEP85_RS29240 (HEP85_29500) nrdR 6668334..6668897 (+) 564 WP_168530555.1 transcriptional regulator NrdR -
  HEP85_RS29245 (HEP85_29505) - 6669048..6671951 (+) 2904 WP_329290939.1 vitamin B12-dependent ribonucleotide reductase -
  HEP85_RS29250 (HEP85_29510) - 6672043..6672576 (-) 534 WP_168530557.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27951.62 Da        Isoelectric Point: 7.4755

>NTDB_id=382369 HEP85_RS29235 WP_168530554.1 6667039..6667815(-) (dinR/lexA) [Streptomyces sp. RPA4-2]
MTTTADSATITAQDRSQGRLEPVHAMNEATNHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=382369 HEP85_RS29235 WP_168530554.1 6667039..6667815(-) (dinR/lexA) [Streptomyces sp. RPA4-2]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCATGAGGGGCCCAAGCGTTCCCTGCCGGGCCGACCTCCAGGCATCCGTGCGGACAGCTCGGGACTCA
CCGACAGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGACGCGGCTACCCACCGTCGATGCGGGAGATC
GGACAGGCGGTAGGCCTCTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
AGACCCGCACCGCCCGCGCGCGTACGAGGTCAGGGGATCCGACCAGTCCTCGGCACAGCCCACGGACACCGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTGGGCCGTATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCCGTGGAGGACGTC
TTCCCGCTCCCCCGGCAGCTGGTGGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAAGCGGC
CATCTGTGACGGTGACTGGGTGACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCACAACTCCGCCTACCAGCCGATC
CCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCCGTACTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372

Multiple sequence alignment