Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HEP85_RS28185 Genome accession   NZ_CP050975
Coordinates   6413151..6415367 (+) Length   738 a.a.
NCBI ID   WP_168530409.1    Uniprot ID   -
Organism   Streptomyces sp. RPA4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6408151..6420367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP85_RS28180 (HEP85_28420) - 6411147..6412985 (-) 1839 WP_168530408.1 HSP90 family protein -
  HEP85_RS28185 (HEP85_28425) recG 6413151..6415367 (+) 2217 WP_168530409.1 ATP-dependent DNA helicase RecG Machinery gene
  HEP85_RS28190 (HEP85_28430) rsmD 6415548..6416135 (+) 588 WP_329527492.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HEP85_RS28195 (HEP85_28435) coaD 6416162..6416641 (+) 480 WP_211118255.1 pantetheine-phosphate adenylyltransferase -
  HEP85_RS28200 (HEP85_28440) - 6416741..6417811 (+) 1071 WP_168530412.1 ATP synthase F0 subunit B -
  HEP85_RS28205 (HEP85_28445) - 6417946..6418602 (+) 657 WP_168534098.1 DUF177 domain-containing protein -
  HEP85_RS28210 (HEP85_28450) rpmF 6418605..6418778 (+) 174 WP_006139588.1 50S ribosomal protein L32 -
  HEP85_RS28215 (HEP85_28455) rnc 6418798..6419655 (+) 858 WP_168530413.1 ribonuclease III -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79577.10 Da        Isoelectric Point: 6.2772

>NTDB_id=382364 HEP85_RS28185 WP_168530409.1 6413151..6415367(+) (recG) [Streptomyces sp. RPA4-2]
MDLVPALDEPLKKVLGPPTAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNHRLQLAHPAYELLTGDGDEAVESVDSWAG
ALIPIYPATAKLESWKLAKAVQTVLPSAQEAVDPLPDSLRDGRGLVTLPEALLKIHRPHTKADIGDARARLKWDEAFVLQ
VALARRRHADAQLPAVARVPAPDGLLTAFDAKLPFTLTEGQRKVSKEIFDDLATEHPMHRLLQGEVGSGKTLVALRAMLA
VVDAGGQAVMLAPTEVLAQQHHRSVTEMMGELAEGGTLGGAEHSTKVVLLTGSMGVAGRRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AADKPHFLARAWERVREEVGNGHQAYVVCPRIGDGEDDPKKGAKKKSPEDEAEKRPPLAVVDIARQLAKGPLQGLRVEVL
HGRMPPDDKDTVMRGFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEA
SPARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLTVIEDEEIIAEAREEAAAVVAADPELAGFPGLR
TALEALLDEEREQYLDKG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=382364 HEP85_RS28185 WP_168530409.1 6413151..6415367(+) (recG) [Streptomyces sp. RPA4-2]
ATGGATCTCGTGCCCGCGCTCGATGAACCACTGAAGAAGGTGCTCGGCCCTCCCACCGCGAAGGTGATGGCCGAGCATCT
CGGCCTGCACACCGTCGGTGATCTCCTGCACCACTATCCGCGCAGATACGAGGAGCGCGGACAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCCTGCACACCTTCGCCTCCTCCAAGGCG
CCGCGCGGCAAGGGCCAGCGCCTGGAGGTGACCATCACGGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGACCTGCTGCCCGGCACCCGCGCGATGTTCTCGGGCAAGGTCTCCGTCTTCAACCACCGCC
TCCAGCTCGCCCACCCGGCCTACGAACTGCTGACCGGTGACGGCGACGAGGCCGTGGAGAGCGTCGACAGCTGGGCCGGT
GCCCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGCTCGCCAAAGCCGTCCAGACGGTACTGCCCAG
CGCCCAGGAAGCCGTCGACCCGCTCCCGGACTCCCTTCGCGACGGCCGCGGCCTGGTGACCCTCCCCGAGGCCCTCCTCA
AGATCCACCGTCCGCACACCAAGGCGGACATCGGCGACGCCCGCGCCCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCCCTGGCCCGCCGCCGCCACGCCGACGCCCAACTCCCCGCCGTGGCCCGCGTCCCCGCACCGGACGGCCTGCTCAC
CGCCTTCGACGCCAAGCTCCCTTTCACCCTCACCGAGGGCCAGCGGAAGGTCTCCAAGGAGATCTTCGACGACCTCGCGA
CGGAGCATCCGATGCACCGGCTGCTCCAGGGGGAGGTGGGCAGTGGGAAGACACTGGTCGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCGGGCGGGCAGGCCGTGATGCTCGCGCCCACCGAAGTGCTCGCCCAGCAGCACCACCGGTCGGTCACCGA
GATGATGGGGGAGCTGGCCGAGGGCGGGACGCTGGGCGGCGCCGAGCACTCCACCAAAGTCGTGCTGCTCACCGGGTCCA
TGGGGGTGGCGGGGCGCCGGCAGGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGCATCGTCATCGGCACACACGCGCTG
ATCGAGGACAAGGTGCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGTTTCGGCGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTCCTGGTCATGACCGCCACCCCCATCCCGCGCACGGTCGCGATGA
CCGTCTTCGGTGACCTGGAGACCTCCGTCCTCGACCAGCTCCCCGCGGGGCGCTCACCGATCGCCAGCCATGTCGTCCCC
GCCGCGGACAAGCCGCACTTCCTCGCCCGTGCCTGGGAGCGCGTGCGCGAGGAGGTGGGCAACGGCCATCAGGCCTACGT
GGTCTGCCCCCGCATCGGGGACGGGGAGGACGACCCGAAGAAGGGCGCCAAGAAGAAGTCGCCCGAGGACGAGGCCGAGA
AGCGCCCGCCCCTCGCCGTCGTCGACATCGCCCGGCAGCTGGCCAAGGGCCCCCTCCAGGGACTCCGGGTCGAGGTCCTG
CACGGCCGTATGCCGCCCGACGACAAGGACACCGTGATGCGCGGCTTCGCCGCCGGCGAGACCGACGTCCTGGTCGCCAC
GACCGTCATCGAGGTCGGCGTGAACGTGCCGAACGCCACGGCCATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCC
AGCTCCATCAGCTGCGCGGCCGGGTCGGCCGGGGTTCCGCGGCCGGACTCTGCCTGCTGGTCAGCGAGATGCCCGAGGCG
AGCCCGGCCCGTCAGCGGCTGAACGCGGTGGCGTCCACACTCGACGGTTTCGAACTCTCGCGCATCGACCTCGAACAGCG
CCGTGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCGTCGCTGCGCATGCTCACCGTCATCGAGGACGAGG
AGATCATCGCCGAGGCCCGTGAGGAGGCGGCCGCGGTCGTCGCCGCCGACCCGGAACTCGCCGGGTTCCCGGGTCTGCGC
ACCGCCCTGGAGGCGCTCCTGGACGAGGAACGCGAGCAGTATCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(550-625)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(299-451)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.197

94.715

0.362