Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HEP85_RS01585 Genome accession   NZ_CP050975
Coordinates   424850..425521 (-) Length   223 a.a.
NCBI ID   WP_168525489.1    Uniprot ID   -
Organism   Streptomyces sp. RPA4-2     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 419850..430521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP85_RS01560 (HEP85_01710) - 420204..421169 (+) 966 WP_348772361.1 NAD(P)-dependent oxidoreductase -
  HEP85_RS01565 (HEP85_01715) - 421177..421419 (-) 243 WP_168525481.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  HEP85_RS01570 (HEP85_01720) - 421486..422910 (-) 1425 WP_168525483.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  HEP85_RS01575 (HEP85_01725) - 422943..423539 (-) 597 WP_168525485.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  HEP85_RS01580 (HEP85_01730) - 423680..424606 (+) 927 WP_168525487.1 AraC family transcriptional regulator -
  HEP85_RS01585 (HEP85_01735) dinR/lexA 424850..425521 (-) 672 WP_168525489.1 transcriptional repressor LexA Regulator
  HEP85_RS01590 (HEP85_01740) - 425861..426283 (-) 423 WP_168525491.1 MarR family winged helix-turn-helix transcriptional regulator -
  HEP85_RS01595 (HEP85_01745) dxs 426655..428547 (+) 1893 WP_168525493.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HEP85_RS01600 (HEP85_01750) - 428901..430352 (+) 1452 WP_168525495.1 DUF488 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24068.45 Da        Isoelectric Point: 6.2566

>NTDB_id=382301 HEP85_RS01585 WP_168525489.1 424850..425521(-) (dinR/lexA) [Streptomyces sp. RPA4-2]
MENSAPARRGRPPGTRNAGGELTSRQSAIVGYITETVRRQGYPPSMREIGQAVNLSSTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGSLSQAPVEVPLVGRIAAGAPLLAEEMVEDVYSLPRQIVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLGDEATIKVLLRQDGRVWLMPRNPSYEPIPGDEAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=382301 HEP85_RS01585 WP_168525489.1 424850..425521(-) (dinR/lexA) [Streptomyces sp. RPA4-2]
ATGGAGAACAGCGCGCCCGCACGCCGAGGCCGTCCGCCGGGCACCCGGAACGCCGGGGGCGAGCTGACGAGCCGCCAGTC
GGCCATCGTCGGCTACATCACCGAGACGGTCCGGCGCCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTCA
ACCTCTCCAGCACCTCCTCGGTCGCCCACCAGCTGATGGCTCTCGAACGCAAGGGCGTCCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCGCGTGCGGCCCTCGTGGGCGCCCGACCTGGGCAGTCTGAGCCAGGCGCCGGTGGAGGTGCCCCTCGT
AGGGCGGATCGCCGCGGGAGCACCCCTGCTCGCGGAGGAGATGGTCGAGGACGTCTACTCGCTGCCCCGCCAGATCGTCG
GCGACGGTGACCTGTTCGCCCTGACGGTCTCCGGTGACTCCATGATCGACGCGGCGATCTGCGACGGTGACATCGTGACC
GTCAGACGCCAGGACAGCGCCGACCACGGAGACATCGTCGCCGCGCTCCTCGGGGACGAGGCCACCATCAAGGTGCTGCT
CCGCCAGGACGGCCGGGTGTGGCTCATGCCCCGAAACCCGTCCTACGAGCCGATCCCCGGCGATGAAGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.857

91.031

0.39