Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BSUW23_RS17700 Genome accession   NC_014479
Coordinates   3429449..3430138 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii str. W23     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3424449..3435138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS17665 (BSUW23_17365) flgN 3424628..3425110 (-) 483 WP_003219714.1 flagellar protein FlgN -
  BSUW23_RS17670 (BSUW23_17370) flgM 3425126..3425392 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSUW23_RS17675 (BSUW23_17375) - 3425473..3425892 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  BSUW23_RS17680 (BSUW23_17380) comFC 3425965..3426687 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  BSUW23_RS17685 (BSUW23_17385) comFB 3426651..3426947 (-) 297 WP_003219707.1 late competence protein ComFB -
  BSUW23_RS17690 (BSUW23_17390) comFA 3427016..3428398 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  BSUW23_RS17695 (BSUW23_17395) - 3428506..3429351 (-) 846 WP_003219702.1 DegV family protein -
  BSUW23_RS17700 (BSUW23_17400) degU 3429449..3430138 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSUW23_RS17705 (BSUW23_17405) degS 3430221..3431378 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  BSUW23_RS17710 (BSUW23_17410) - 3431594..3432247 (+) 654 WP_003219692.1 YigZ family protein -
  BSUW23_RS17715 (BSUW23_17415) - 3432247..3433371 (+) 1125 WP_003219689.1 LCP family protein -
  BSUW23_RS17720 (BSUW23_17420) - 3433445..3434521 (-) 1077 WP_003219687.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=38222 BSUW23_RS17700 WP_003219701.1 3429449..3430138(-) (degU) [Bacillus spizizenii str. W23]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=38222 BSUW23_RS17700 WP_003219701.1 3429449..3430138(-) (degU) [Bacillus spizizenii str. W23]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCCTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTATCCTGAAATCCGC
AGACCATTACATATTTTAACTCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment