Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BSUW23_RS17690 Genome accession   NC_014479
Coordinates   3427016..3428398 (-) Length   460 a.a.
NCBI ID   WP_079996654.1    Uniprot ID   -
Organism   Bacillus spizizenii str. W23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3422016..3433398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUW23_RS17655 (BSUW23_17355) flgL 3422180..3423076 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  BSUW23_RS17660 (BSUW23_17360) flgK 3423086..3424609 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  BSUW23_RS17665 (BSUW23_17365) flgN 3424628..3425110 (-) 483 WP_003219714.1 flagellar protein FlgN -
  BSUW23_RS17670 (BSUW23_17370) flgM 3425126..3425392 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSUW23_RS17675 (BSUW23_17375) - 3425473..3425892 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  BSUW23_RS17680 (BSUW23_17380) comFC 3425965..3426687 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  BSUW23_RS17685 (BSUW23_17385) comFB 3426651..3426947 (-) 297 WP_003219707.1 late competence protein ComFB -
  BSUW23_RS17690 (BSUW23_17390) comFA 3427016..3428398 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  BSUW23_RS17695 (BSUW23_17395) - 3428506..3429351 (-) 846 WP_003219702.1 DegV family protein -
  BSUW23_RS17700 (BSUW23_17400) degU 3429449..3430138 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSUW23_RS17705 (BSUW23_17405) degS 3430221..3431378 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator
  BSUW23_RS17710 (BSUW23_17410) - 3431594..3432247 (+) 654 WP_003219692.1 YigZ family protein -
  BSUW23_RS17715 (BSUW23_17415) - 3432247..3433371 (+) 1125 WP_003219689.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52001.04 Da        Isoelectric Point: 9.5507

>NTDB_id=38221 BSUW23_RS17690 WP_079996654.1 3427016..3428398(-) (comFA) [Bacillus spizizenii str. W23]
MIVPAEKNISFSKELQQTLQSRHLLRTELPFSDELIEWHTENGYIAAQNSISINKRGYQCNRCGQNDQRYFSFYPSSGKN
RLYCRSCVMMGRVSEDVLLYSWIGEDEQNWQQIKLTWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRIKAAFQCADISALYGGSDDKGCLSPLMISTTHQLLRYKGAFDVIIIDEVDAFPY
SADQTLQFAVQKARKKSSTLVYVSATPSQELKRKTLNGQLYSVRIPARHHQKPLPEPRFLWCGNWKKKLYRNKIPLAVKR
WIEFHVKEGRPVFLFVPSVSVLEKAVACFKDVICRAAAVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTIPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHYGKTKSMLDARKHIKEMNALAAKKE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=38221 BSUW23_RS17690 WP_079996654.1 3427016..3428398(-) (comFA) [Bacillus spizizenii str. W23]
CTGATTGTGCCAGCTGAAAAGAACATTTCTTTTTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGAAC
CGAACTCCCATTTTCCGATGAGTTGATTGAATGGCATACCGAGAATGGATATATCGCAGCACAAAACTCTATATCTATAA
ATAAACGGGGGTATCAGTGTAATAGGTGCGGCCAAAATGATCAGCGGTATTTTTCTTTTTACCCCTCATCTGGAAAGAAT
CGGCTGTATTGTCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGATGTTCTTTTATATTCGTGGATAGGAGAGGATGA
ACAAAACTGGCAACAAATAAAGCTGACATGGGATGGCAAGCTCTCAAGCGGACAGCAAAAAGCCGCCAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATTTGGGCAGTTTGCGGCGCTGGGAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTGTGTATTGCGACACCCCGCACCGATGTGGTATTAGAGCTTGCTCCTAGAAT
TAAGGCTGCCTTTCAGTGTGCTGACATTTCAGCACTTTACGGAGGAAGTGATGACAAAGGGTGTTTATCTCCGCTTATGA
TTTCCACCACACATCAGCTTTTGCGATATAAAGGCGCATTCGACGTTATAATCATTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCTAGAAAGAAAAGCAGCACCCTTGTTTATGTAAGTGCAACACC
TTCTCAAGAATTAAAAAGAAAAACACTGAACGGACAGTTATATTCAGTTCGTATTCCAGCCAGACACCATCAGAAACCTT
TGCCTGAACCGCGCTTTCTATGGTGTGGAAACTGGAAAAAGAAATTATACCGAAATAAAATTCCGCTAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTGTTTGTTCCCTCCGTTTCTGTTCTGGAAAAGGCAGTTGC
ATGCTTTAAAGATGTTATTTGCCGAGCAGCGGCAGTGCATGCGGAAGATAAACACAGAAAAGAGAAAGTACAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACAATATTAGAAAGAGGCGTCACGATTCCCAAGGTGCAAACGGGTGTA
TTAGGGGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
AGACGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
CCTTGGCAGCAAAAAAAGAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

88.478

100

0.885

Multiple sequence alignment