Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HFD83_RS09550 Genome accession   NZ_CP050916
Coordinates   2026906..2027502 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter baumannii strain DT-Ab003     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2021906..2032502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFD83_RS09515 (HFD83_09515) - 2021990..2022841 (-) 852 WP_001271636.1 AAA family ATPase -
  HFD83_RS09520 (HFD83_09520) - 2022871..2023257 (-) 387 WP_001206390.1 hypothetical protein -
  HFD83_RS09525 (HFD83_09525) - 2023250..2023510 (-) 261 WP_188146221.1 YcgL domain-containing protein -
  HFD83_RS09530 (HFD83_09530) - 2023998..2024162 (+) 165 WP_000086293.1 hypothetical protein -
  HFD83_RS09535 (HFD83_09535) - 2024235..2024576 (-) 342 WP_000367439.1 hypothetical protein -
  HFD83_RS09540 (HFD83_09540) - 2024707..2024973 (-) 267 WP_000185062.1 hypothetical protein -
  HFD83_RS09545 (HFD83_09545) - 2025476..2026600 (-) 1125 WP_000486121.1 ribonuclease D -
  HFD83_RS09550 (HFD83_09550) recR 2026906..2027502 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  HFD83_RS09555 (HFD83_09555) - 2027512..2027841 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  HFD83_RS09560 (HFD83_09560) - 2028107..2028343 (-) 237 WP_000917295.1 hypothetical protein -
  HFD83_RS09565 (HFD83_09565) - 2028521..2029708 (-) 1188 WP_001076395.1 O-succinylhomoserine sulfhydrylase -
  HFD83_RS09570 (HFD83_09570) - 2029842..2030927 (+) 1086 WP_000825843.1 alpha/beta fold hydrolase -
  HFD83_RS09575 (HFD83_09575) - 2031008..2031649 (-) 642 Protein_1865 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=382192 HFD83_RS09550 WP_000490551.1 2026906..2027502(-) (recR) [Acinetobacter baumannii strain DT-Ab003]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=382192 HFD83_RS09550 WP_000490551.1 2026906..2027502(-) (recR) [Acinetobacter baumannii strain DT-Ab003]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCCCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCACATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACAGAGCACGAAATTTGTGATATTTGCGCTTCAACAGAAAGAGATGATCAATTG
CTTTGTGTAGTTGAGTCCCCGGCAGATGTTATGGCAATCGAGCAAAGTGGTAGTTTTCGTGGCAAATACCATGTGTTGGG
TGGACACCTTTCTCCATTAGATGGAATCGGGCCAGAAGAAATAGGCATTCCTTATCTAATCCAACGGTTAAGCCAAGGTA
CGATCGAAGAAGTCATTTTGGCAACTAATGCTACTGTGGAAGGTCAGGCGACAGCGCATTATTTGGTTGAAGCGACGAAG
CATTTACCTATTCACATGACACGTATTGCGCAAGGCGTACCACAAGGTGGCGAGCTTGAATATGTGGATAGTCATACCTT
AAGTCAGGCTGTTCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424