Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPPN135_RS05005 Genome accession   NC_017379
Coordinates   1048353..1049618 (-) Length   421 a.a.
NCBI ID   WP_000505566.1    Uniprot ID   -
Organism   Helicobacter pylori Puno135     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043353..1054618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN135_RS04965 (HPPN135_05115) - 1043473..1045200 (-) 1728 WP_001208211.1 type IV secretory system conjugative DNA transfer family protein -
  HPPN135_RS04970 (HPPN135_05120) - 1045201..1045758 (-) 558 WP_001167772.1 hypothetical protein -
  HPPN135_RS04975 (HPPN135_05125) - 1045759..1046049 (-) 291 WP_000159828.1 hypothetical protein -
  HPPN135_RS04980 (HPPN135_05130) - 1046046..1046501 (-) 456 WP_000795436.1 hypothetical protein -
  HPPN135_RS04985 (HPPN135_05135) - 1046551..1047438 (-) 888 WP_014537143.1 CpaF/VirB11 family protein -
  HPPN135_RS04990 (HPPN135_05140) - 1047438..1047737 (-) 300 WP_000660135.1 hypothetical protein -
  HPPN135_RS04995 (HPPN135_05145) - 1047734..1047997 (-) 264 WP_000564647.1 hypothetical protein -
  HPPN135_RS05000 (HPPN135_05150) - 1047990..1048283 (-) 294 WP_000422456.1 hypothetical protein -
  HPPN135_RS05005 (HPPN135_05155) comB10 1048353..1049618 (-) 1266 WP_000505566.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPN135_RS05010 (HPPN135_05160) - 1049618..1051135 (-) 1518 WP_000737121.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HPPN135_RS05015 (HPPN135_05165) - 1051135..1052127 (-) 993 WP_000416477.1 type IV secretion system protein -
  HPPN135_RS08605 (HPPN135_05170) - 1052129..1052257 (-) 129 WP_000243255.1 hypothetical protein -
  HPPN135_RS05020 - 1052257..1054191 (-) 1935 Protein_982 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 47625.03 Da        Isoelectric Point: 10.1658

>NTDB_id=38211 HPPN135_RS05005 WP_000505566.1 1048353..1049618(-) (comB10) [Helicobacter pylori Puno135]
MGFFRVIRNAPIVSVFIVLMLIFCAWFFLYDDSSPKAVRNYVKGKFPISDYLYKKADKKKIPPQNNVVKQQIKEEEIKKS
CKGQITDNKGNLIDDDCNIIATQKQVNNLPNLPKDILKTKPTVASNPFNYNTANEEEKIRLVILASRISSQKETQPPTFV
KNSVSNTKSKEKQELEKEYGSIGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGR
AVLIPKGSRAIGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNG
LLIGLTSGLTEAMKNKRGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMRDQIRIKPIITIREGSHIFISPNTDIWFPIP
KNNEVLAKFFNEEKEQNNDTK

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=38211 HPPN135_RS05005 WP_000505566.1 1048353..1049618(-) (comB10) [Helicobacter pylori Puno135]
ATGGGCTTTTTTAGAGTAATTAGAAACGCACCGATTGTAAGTGTCTTTATTGTTTTGATGCTTATTTTTTGTGCATGGTT
TTTCCTTTATGATGATAGCTCACCTAAAGCAGTGAGAAATTATGTTAAAGGCAAGTTTCCAATCTCCGACTATCTCTACA
AAAAAGCGGATAAAAAGAAGATCCCACCACAGAACAATGTCGTTAAACAACAGATTAAAGAAGAAGAAATTAAAAAATCT
TGTAAGGGTCAGATAACAGATAATAAGGGTAATTTAATAGATGATGATTGCAATATTATAGCCACTCAAAAACAAGTTAA
TAACTTACCAAACTTACCAAAAGATATACTTAAAACCAAACCTACCGTTGCCTCCAATCCTTTCAACTACAATACCGCTA
ACGAAGAAGAAAAAATCCGCCTTGTGATTTTAGCGTCTCGTATTAGCAGCCAAAAAGAAACACAGCCTCCAACCTTTGTA
AAAAATAGTGTTTCTAATACAAAATCCAAAGAAAAACAAGAACTTGAAAAAGAATACGGCTCTATCGGGTTTAAAAATTT
TAAAAGAAAAAATGTAGCGAGCAGTGAAAACAAACTTTTAAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGA
TCACTCCTATTAGCAGTGAAATAGGAGGGAGTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGA
GCGGTTTTAATCCCTAAAGGGAGTAGAGCCATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAAT
TGCTTGGAATAGGATAATCACGCCACAAGGGGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTTAAGGGCTATA
ACGGCATGATAGGCACGCTCCATAACAAATATTGGGAACGCTATGGTATCCCCTTATCCTTAAGCACCTTGTCAAACGGG
CTACTCATAGGTCTTACTAGCGGTCTTACTGAAGCGATGAAAAACAAAAGGGGTGGTTTCAATCAAAACTATTTTGGAGA
CTACATGATGATGCAAATGACGAGGCAAACTGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGATCAAATCA
GGATTAAGCCCATTATCACTATTAGAGAAGGCAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCT
AAAAACAATGAAGTCTTAGCGAAATTTTTTAATGAAGAAAAGGAGCAAAACAATGATACAAAATAG

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(202-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

54.452

69.359

0.378

Multiple sequence alignment