Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FYA21_RS01520 Genome accession   NZ_CP043180
Coordinates   316229..317113 (-) Length   294 a.a.
NCBI ID   WP_033853982.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PG20180064     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311229..322113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA21_RS01505 (FYA21_01505) miaB 313076..314527 (+) 1452 WP_096641101.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FYA21_RS01510 (FYA21_01510) - 314565..315653 (+) 1089 WP_000122983.1 PhoH family protein -
  FYA21_RS01515 (FYA21_01515) ybeY 315663..316139 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  FYA21_RS01520 (FYA21_01520) tonB2 316229..317113 (-) 885 WP_033853982.1 energy transducer TonB Machinery gene
  FYA21_RS01525 (FYA21_01525) - 317344..318015 (+) 672 WP_096641099.1 hypothetical protein -
  FYA21_RS01530 (FYA21_01530) - 318173..318886 (+) 714 WP_000201544.1 DUF3108 domain-containing protein -
  FYA21_RS01535 (FYA21_01535) - 318959..319534 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  FYA21_RS01540 (FYA21_01540) wrbA 319587..320180 (-) 594 WP_001183347.1 NAD(P)H:quinone oxidoreductase -
  FYA21_RS01545 (FYA21_01545) - 320468..321715 (+) 1248 WP_096641097.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33564.45 Da        Isoelectric Point: 9.4087

>NTDB_id=381992 FYA21_RS01520 WP_033853982.1 316229..317113(-) (tonB2) [Acinetobacter baumannii strain PG20180064]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=381992 FYA21_RS01520 WP_033853982.1 316229..317113(-) (tonB2) [Acinetobacter baumannii strain PG20180064]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAGCAATTACAAAGTCAGTTTCAGGCAAAGGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment