Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FYA42_RS07015 Genome accession   NZ_CP043172
Coordinates   1398192..1399550 (+) Length   452 a.a.
NCBI ID   WP_005013204.1    Uniprot ID   -
Organism   Bordetella holmesii strain F588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393192..1404550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYA42_RS06990 (FYA42_07035) hpnD 1393744..1394607 (-) 864 WP_005013195.1 presqualene diphosphate synthase HpnD -
  FYA42_RS06995 (FYA42_07040) hpnC 1394609..1395430 (-) 822 WP_005013197.1 squalene synthase HpnC -
  FYA42_RS07000 (FYA42_07045) alr 1395537..1396667 (+) 1131 WP_005013199.1 alanine racemase -
  FYA42_RS07005 (FYA42_07050) - 1396779..1397409 (+) 631 Protein_1346 SDR family oxidoreductase -
  FYA42_RS07010 (FYA42_07055) - 1397419..1398009 (-) 591 WP_005013203.1 hypothetical protein -
  FYA42_RS07015 (FYA42_07060) radA 1398192..1399550 (+) 1359 WP_005013204.1 DNA repair protein RadA Machinery gene
  FYA42_RS07020 (FYA42_07065) - 1399621..1400391 (+) 771 WP_005013207.1 sulfite exporter TauE/SafE family protein -
  FYA42_RS07025 (FYA42_07070) - 1400550..1400777 (+) 228 WP_005013210.1 hypothetical protein -
  FYA42_RS07030 (FYA42_07075) - 1400837..1402231 (-) 1395 WP_005013213.1 MATE family efflux transporter -
  FYA42_RS07035 (FYA42_07080) - 1402228..1403958 (-) 1731 WP_005013215.1 glycosyltransferase family 39 protein -
  FYA42_RS07040 (FYA42_07085) - 1404118..1404381 (-) 264 WP_005013217.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48088.33 Da        Isoelectric Point: 7.0044

>NTDB_id=381897 FYA42_RS07015 WP_005013204.1 1398192..1399550(+) (radA) [Bordetella holmesii strain F588]
MAKTRTVYVCAECGGTTLKWQGKCPHCSAWNTLEETVESATPAANHRYAPLASASPVRSLADIEARETPRQPTGLDEFDR
VLGGGLVEGAVVLIGGDPGIGKSTLLLQALAALSASVAVLYVTGEESAEQVALRARRLGLQTGQVNLLAEIRLEAIQAAV
SQQKPAVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTLLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEGD
THSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQEQVAGSCVMATQEGTRPMLVEIQALVDSSHAPNP
KRLTVGLESNRLAMLLAVMHRHAGVTTHDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDRPLPKGLFAFGEIGLAGEI
RPAPRGQERLREAAKLGFSIALIPKANAPRQPVEGLEIWAVDRLQEALDKLR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=381897 FYA42_RS07015 WP_005013204.1 1398192..1399550(+) (radA) [Bordetella holmesii strain F588]
ATGGCCAAAACGCGAACCGTCTATGTATGCGCCGAGTGCGGCGGCACCACGCTCAAATGGCAGGGCAAGTGTCCGCATTG
CTCGGCCTGGAATACTCTCGAAGAAACCGTCGAGTCTGCCACCCCGGCAGCCAATCACCGCTACGCGCCGCTGGCGTCGG
CCAGTCCCGTGCGCAGTCTGGCCGATATCGAAGCGCGTGAGACGCCGCGCCAGCCGACCGGCCTCGATGAGTTCGATCGG
GTGCTGGGCGGCGGGTTGGTCGAGGGCGCGGTGGTCCTCATCGGTGGCGATCCGGGCATCGGTAAATCCACGCTGCTGTT
GCAGGCCTTGGCCGCCTTATCGGCCAGCGTCGCCGTGCTGTATGTCACGGGCGAAGAGTCCGCTGAGCAGGTCGCCCTGC
GCGCGCGTCGCCTGGGCTTGCAGACAGGGCAGGTCAACTTGTTGGCCGAGATACGGCTCGAGGCGATCCAGGCAGCCGTG
TCTCAACAAAAGCCCGCCGTGGCGGTCATCGACTCTATCCAGACACTCTATAGCGGCGAACTGACCGCCGCGCCGGGCTC
GGTTTCTCAGGTGCGCGAATGCGCCGCGCAACTGACGCTGCTAGCCAAGCAGACCGGTATCGCCATCGTCATGATCGGCC
ATGTCACCAAGGACGGCGCCTTGGCCGGTCCCCGCGTGCTGGAGCACATTGTCGACACGGTGCTCTATTTCGAAGGAGAT
ACCCACTCTTCGTTCCGGCTGGTACGGGCATTCAAGAACCGCTTCGGCGCGGTCAACGAATTGGGCGTATTTGCCATGAC
AGATCGCGGGCTGCGCGGCGTGGCGAATCCGTCGGCCTTGTTTCTGTCCCAGCATCAGGAGCAGGTGGCGGGCTCCTGCG
TCATGGCGACCCAGGAAGGCACACGCCCCATGCTGGTGGAAATTCAAGCCTTGGTCGATAGCTCCCACGCTCCCAATCCG
AAACGCTTGACGGTGGGGCTGGAAAGCAATCGTCTGGCCATGTTGCTGGCTGTCATGCACCGCCATGCCGGCGTGACCAC
GCATGACCAGGATGTCTTCGTCAATGCCGTGGGAGGCGTGCGCATTACCGAACCCGCGGCCGATTTGCCCGTTCTGCTGG
CCATCATGTCATCGTTGCGGGACCGGCCCCTACCCAAAGGGCTGTTCGCCTTTGGTGAAATCGGGCTGGCCGGCGAGATT
CGTCCGGCCCCGCGCGGCCAGGAGCGCCTGCGCGAGGCGGCCAAGCTGGGCTTTTCCATTGCGCTCATCCCCAAAGCCAA
TGCACCTCGGCAACCCGTCGAGGGGCTGGAAATCTGGGCCGTCGATCGCCTGCAGGAAGCGTTGGACAAATTGCGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

100

0.493
  radA Streptococcus mitis SK321

47.357

100

0.476
  radA Streptococcus pneumoniae Rx1

46.827

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.827

100

0.473
  radA Streptococcus pneumoniae D39

46.827

100

0.473
  radA Streptococcus pneumoniae R6

46.827

100

0.473
  radA Streptococcus mitis NCTC 12261

47.02

100

0.471

Multiple sequence alignment