Detailed information NTG0381720

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FYA56_RS04335
• Genome accession: NZ_CP043159
• Coordinates: 918988..920187 (+)
• Length: 399 a.a.
• NCBI ID: WP_041937118.1
• Uniprot ID: -
• Organism: Bordetella parapertussis strain H242
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 913988..925187

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FYA56_RS04310 (FYA56_04305)	-	915848..916234 (+)	387	WP_010927711.1	MOSC N-terminal beta barrel domain-containing protein	-
FYA56_RS04315 (FYA56_04310)	-	916242..917459 (-)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
FYA56_RS04320 (FYA56_04315)	-	917456..917707 (-)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FYA56_RS04325 (FYA56_04320)	coaD	917762..918271 (-)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
FYA56_RS04330 (FYA56_04325)	rsmD	918292..918912 (-)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FYA56_RS04335 (FYA56_04330)	pilA	918988..920187 (+)	1200	WP_041937118.1	signal recognition particle-docking protein FtsY	Machinery gene
FYA56_RS04340 (FYA56_04335)	-	920234..921832 (-)	1599	WP_010927713.1	CYTH and CHAD domain-containing protein	-
FYA56_RS04345 (FYA56_04340)	phnE	922071..922892 (-)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
FYA56_RS04350 (FYA56_04345)	phnE	922889..923758 (-)	870	WP_169507383.1	phosphonate ABC transporter, permease protein PhnE	-
FYA56_RS04355 (FYA56_04350)	phnC	923776..924546 (-)	771	WP_010927715.1	phosphonate ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41695.66 Da
• Isoelectric Point: 5.2904

>NTDB_id=381720 FYA56_RS04335 WP_041937118.1 918988..920187(+) (pilA) [Bordetella parapertussis strain H242]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=381720 FYA56_RS04335 WP_041937118.1 918988..920187(+) (pilA) [Bordetella parapertussis strain H242]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (195-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516