Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPPN120_RS02070 Genome accession   NC_017378
Coordinates   419191..420366 (-) Length   391 a.a.
NCBI ID   WP_000060219.1    Uniprot ID   -
Organism   Helicobacter pylori Puno120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 414191..425366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPN120_RS02035 (HPPN120_02105) - 414499..414813 (+) 315 WP_000868000.1 hypothetical protein -
  HPPN120_RS02040 (HPPN120_02110) - 414791..415567 (+) 777 WP_000602369.1 RNA polymerase sigma factor FliA -
  HPPN120_RS02045 (HPPN120_02115) fliM 415560..416624 (+) 1065 WP_000763579.1 flagellar motor switch protein FliM -
  HPPN120_RS02050 (HPPN120_02120) fliY 416628..417500 (+) 873 WP_001150632.1 flagellar motor switch protein FliY -
  HPPN120_RS02055 (HPPN120_02125) - 417529..418065 (+) 537 WP_000964035.1 YhcH/YjgK/YiaL family protein -
  HPPN120_RS02060 (HPPN120_02130) - 418062..418559 (+) 498 WP_000780259.1 DUF2147 domain-containing protein -
  HPPN120_RS02065 (HPPN120_02135) fur 418579..419031 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPPN120_RS02070 (HPPN120_02140) rarA 419191..420366 (-) 1176 WP_000060219.1 replication-associated recombination protein A Machinery gene
  HPPN120_RS02075 (HPPN120_02145) - 420363..420734 (-) 372 WP_000332994.1 heat shock protein transcriptional repressor HspR -
  HPPN120_RS02080 (HPPN120_02150) - 420744..421610 (-) 867 WP_000045780.1 DnaJ family protein -
  HPPN120_RS02085 (HPPN120_02155) - 421778..423028 (+) 1251 WP_001199598.1 hypothetical protein -
  HPPN120_RS02090 (HPPN120_02160) - 423050..423916 (-) 867 WP_080004508.1 5'-3' exonuclease -
  HPPN120_RS02095 (HPPN120_02165) - 424113..425009 (-) 897 WP_000697556.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43754.41 Da        Isoelectric Point: 8.0467

>NTDB_id=38160 HPPN120_RS02070 WP_000060219.1 419191..420366(-) (rarA) [Helicobacter pylori Puno120]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=38160 HPPN120_RS02070 WP_000060219.1 419191..420366(-) (rarA) [Helicobacter pylori Puno120]
ATGAGTCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATCATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCCAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCTCCCAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTCAATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment