Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FYA69_RS05245 | Genome accession | NZ_CP043146 |
| Coordinates | 1060658..1061884 (+) | Length | 408 a.a. |
| NCBI ID | WP_005015354.1 | Uniprot ID | A0A158M167 |
| Organism | Bordetella holmesii strain H401 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1055658..1066884
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA69_RS05220 (FYA69_05225) | - | 1057529..1057912 (+) | 384 | WP_005015361.1 | MOSC N-terminal beta barrel domain-containing protein | - |
| FYA69_RS05225 (FYA69_05230) | - | 1057909..1059120 (-) | 1212 | WP_005015358.1 | benzoate/H(+) symporter BenE family transporter | - |
| FYA69_RS05230 (FYA69_05235) | - | 1059117..1059371 (-) | 255 | WP_005015357.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| FYA69_RS05235 (FYA69_05240) | coaD | 1059429..1059941 (-) | 513 | WP_005015356.1 | pantetheine-phosphate adenylyltransferase | - |
| FYA69_RS05240 (FYA69_05245) | rsmD | 1059965..1060585 (-) | 621 | WP_026087870.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FYA69_RS05245 (FYA69_05250) | pilA | 1060658..1061884 (+) | 1227 | WP_005015354.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FYA69_RS05250 (FYA69_05255) | - | 1061952..1063541 (-) | 1590 | WP_005015352.1 | CYTH and CHAD domain-containing protein | - |
| FYA69_RS05255 (FYA69_05260) | phnE | 1063738..1064559 (-) | 822 | WP_005015351.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FYA69_RS05260 (FYA69_05265) | phnE | 1064556..1065431 (-) | 876 | WP_005019899.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FYA69_RS05265 (FYA69_05270) | phnC | 1065419..1066189 (-) | 771 | WP_005015347.1 | phosphonate ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 408 a.a. Molecular weight: 42070.54 Da Isoelectric Point: 7.4722
>NTDB_id=381554 FYA69_RS05245 WP_005015354.1 1060658..1061884(+) (pilA) [Bordetella holmesii strain H401]
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD
MFSFFKKKTPPPAAQASPAPPPEPVVQPAAPVSPPAVPSPPPAAAPAVPVPPPAVHPAAPPVQPEPAASPVPAVPEPVAA
PVVPPAPSPSAIAPAAAAEPAAAPKKASWLNRLKQGLARTGQSIGGIFVGVKVDENLFEELESALIMADAGIEATEKLLT
ELRARVKKDRIEDAAQVKTALRQLLTQHLKPLERSFDLTRTQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGD
TFRAAAREQLVEWGTRNNVTVIAQEGGDPAAVAFDAVNAGRARGVGVVMIDTAGRLPTQLHLMEELKKIRRVISKADAAA
PHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEGLEDLQPFVAEE
FASALLAD
Nucleotide
Download Length: 1227 bp
>NTDB_id=381554 FYA69_RS05245 WP_005015354.1 1060658..1061884(+) (pilA) [Bordetella holmesii strain H401]
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA
ATGTTCAGCTTCTTCAAGAAAAAGACCCCTCCGCCCGCCGCGCAGGCTTCGCCCGCGCCGCCGCCGGAGCCTGTCGTCCA
GCCGGCCGCGCCCGTCTCGCCGCCCGCTGTTCCGTCCCCTCCACCCGCCGCAGCGCCTGCTGTGCCTGTCCCGCCGCCTG
CGGTGCATCCGGCGGCGCCGCCCGTTCAGCCCGAACCGGCCGCCTCGCCTGTGCCCGCCGTGCCGGAACCCGTCGCCGCG
CCCGTTGTGCCGCCGGCGCCTTCGCCTTCGGCCATCGCGCCGGCCGCTGCCGCCGAACCGGCCGCCGCACCCAAAAAGGC
CTCCTGGCTCAATCGTCTCAAACAGGGCCTGGCGCGTACCGGGCAGAGCATCGGCGGCATTTTCGTCGGCGTAAAAGTCG
ACGAAAATCTGTTCGAAGAGCTGGAATCCGCCCTCATCATGGCCGATGCCGGTATCGAAGCCACCGAAAAACTCCTCACG
GAGTTGCGTGCGCGCGTCAAAAAAGACCGCATCGAAGATGCGGCTCAGGTCAAGACGGCGCTGCGTCAACTGTTGACGCA
ACACCTCAAGCCGCTCGAGCGCAGCTTTGACCTCACGCGCACCCAGCCTCTGGTGGTGATGATCGCCGGCGTCAACGGCG
CCGGCAAAACGACCTCCATTGGCAAGCTGGCCCATACCTTTCAACGGCAGGGCGCCAGTGTGCTGCTGGCTGCCGGCGAC
ACGTTCCGCGCGGCAGCGCGTGAGCAACTGGTCGAATGGGGCACCCGCAACAACGTCACCGTCATCGCGCAGGAAGGGGG
CGACCCCGCCGCCGTGGCCTTTGACGCGGTCAATGCGGGCCGGGCGCGTGGCGTCGGCGTGGTCATGATAGACACCGCAG
GGCGCCTGCCCACGCAGTTGCACCTGATGGAAGAACTCAAGAAGATCCGTCGCGTCATCAGCAAGGCCGATGCGGCCGCG
CCGCATGAGGTTTTACTGGTGGTCGATGGCAACACCGGCCAGAACGCGCTGGCCCAGATCCGGGCCTTTGACGCGGCCAT
TCAGCTCACGGGTCTGGTCGTGACAAAACTGGACGGTACCGCCAAGGGCGGCACCCTGGCCGCCGTGGCCGCCGGCAGCC
AGGGCGTGCGGCCGGTGCCCGTCTACTGGATAGGCGTGGGCGAGGGCCTGGAAGACTTGCAGCCCTTCGTGGCCGAAGAG
TTCGCCTCCGCCTTGCTGGCAGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
49.765 |
100 |
0.52 |