Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FB2170_RS08490 Genome accession   NC_014472
Coordinates   1925003..1926364 (-) Length   453 a.a.
NCBI ID   WP_013306131.1    Uniprot ID   A4AWB7
Organism   Maribacter sp. HTCC2170     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920003..1931364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FB2170_RS08465 (FB2170_07324) - 1920119..1920670 (-) 552 WP_013306124.1 DUF3575 domain-containing protein -
  FB2170_RS08470 (FB2170_07329) - 1920696..1921214 (-) 519 WP_013306125.1 hypothetical protein -
  FB2170_RS08475 (FB2170_07334) - 1921380..1922141 (+) 762 WP_013306126.1 exodeoxyribonuclease III -
  FB2170_RS08480 (FB2170_07339) - 1922165..1923721 (+) 1557 WP_013306127.1 FG-GAP repeat domain-containing protein -
  FB2170_RS08485 (FB2170_07349) - 1923857..1924897 (+) 1041 WP_013306129.1 NADP(H)-dependent aldo-keto reductase -
  FB2170_RS08490 (FB2170_07359) radA 1925003..1926364 (-) 1362 WP_013306131.1 DNA repair protein RadA Machinery gene
  FB2170_RS08495 (FB2170_07364) - 1926432..1927574 (-) 1143 WP_013306132.1 alpha/beta hydrolase -
  FB2170_RS08500 (FB2170_07369) - 1927605..1928570 (-) 966 WP_013306133.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  FB2170_RS08505 (FB2170_07374) panD 1928573..1928923 (-) 351 WP_013306134.1 aspartate 1-decarboxylase -
  FB2170_RS08510 (FB2170_07379) panC 1928937..1929782 (-) 846 WP_013306135.1 pantoate--beta-alanine ligase -
  FB2170_RS08515 (FB2170_07384) - 1929886..1930695 (+) 810 WP_013306136.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49805.37 Da        Isoelectric Point: 6.7119

>NTDB_id=38151 FB2170_RS08490 WP_013306131.1 1925003..1926364(-) (radA) [Maribacter sp. HTCC2170]
MAKTKTAFFCQNCGSQYAKWVGQCSACKEWNTVVEEVIQKEEKTGWKTPSNTSKKIAKPLRVKEISTEKELRLNAYDLEF
NRVLGGGLVPGSLVLLGGEPGVGKSTLILQIALKLPYKTLYVSGEESQKQIKMRADRIQPNSENCYILTETKTQNIFQQI
EATEPDIVVIDSIQTLHSDYIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNYVYRILRALKNRFGSTAELGIYEMQGNGLREVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLGAKDVFLNITGGISVDDPAIDLAVISAILSSNEDIPIEKGVCFAAEVGLAGEI
RPVQRVEQRIMEAEKLGFNTIYVSKNNKISLKNPKISITLVARIEDIVNELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=38151 FB2170_RS08490 WP_013306131.1 1925003..1926364(-) (radA) [Maribacter sp. HTCC2170]
ATGGCCAAGACCAAAACTGCATTTTTCTGTCAAAATTGTGGCTCCCAATATGCTAAATGGGTGGGGCAATGTTCCGCTTG
CAAAGAATGGAACACAGTCGTAGAAGAAGTAATTCAAAAAGAAGAAAAAACAGGTTGGAAAACCCCTTCGAATACTTCAA
AAAAAATTGCAAAACCTTTACGTGTCAAGGAAATAAGCACCGAAAAAGAACTTCGGTTAAACGCCTATGACCTTGAATTC
AATAGAGTCTTGGGTGGCGGACTCGTTCCTGGCTCATTGGTTCTGTTGGGCGGTGAGCCTGGTGTGGGCAAAAGTACTTT
AATCCTTCAAATTGCCCTAAAGCTTCCGTATAAGACATTGTATGTTTCTGGTGAGGAAAGCCAAAAACAAATAAAAATGC
GGGCGGATCGCATTCAACCAAATAGTGAGAATTGCTATATTCTTACTGAAACAAAAACACAGAATATTTTTCAGCAAATC
GAGGCTACTGAGCCAGATATCGTGGTAATAGATTCGATCCAGACCCTGCATTCCGACTATATTGAATCTGCCGCCGGAAG
CATTTCGCAAATAAGGGAGTGTACCGCTGAGCTTATCAAATTTGCAAAGGAAACCAATACCCCGGTCATTCTAATAGGAC
ATATAACCAAAGATGGATCTATCGCCGGACCCAAAATCTTGGAACATATGGTTGATACAGTGCTTCAATTTGAAGGTGAC
CGCAATTATGTATACCGAATTCTTCGAGCTTTAAAAAACAGATTTGGTTCAACAGCAGAACTTGGTATTTATGAAATGCA
AGGGAATGGTCTGCGTGAGGTTAACAACCCTTCCGAAATACTTATTTCAAAAAACGACGAAGGCCTAAGTGGAACTGCGA
TCGCGTCAACTGTTGAAGGTATGCGCCCATTAATGATTGAAATACAGGCTTTGGTAAGTACAGCGGTTTATGGTACTCCT
CAGCGTTCAACCACAGGCTACAATGCCAAAAGATTAAATATGCTCCTGGCCGTTTTGGAAAAAAGAGCAGGATTCAAATT
GGGGGCAAAAGACGTTTTTCTGAACATTACAGGGGGTATTTCGGTTGATGACCCTGCGATTGATTTAGCGGTTATTTCAG
CAATTCTTTCAAGCAATGAGGACATTCCTATAGAAAAAGGAGTTTGTTTTGCCGCCGAAGTTGGTCTTGCCGGTGAGATT
AGACCTGTGCAACGTGTTGAACAGCGTATCATGGAAGCCGAAAAATTAGGGTTCAATACAATATATGTATCCAAAAACAA
CAAAATCAGTTTAAAAAATCCCAAAATAAGTATCACGCTTGTCGCAAGAATCGAGGATATAGTAAACGAGTTGTTCGGTT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4AWB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.373

100

0.492
  radA Streptococcus mitis NCTC 12261

48.373

100

0.492
  radA Streptococcus pneumoniae Rx1

48.373

100

0.492
  radA Streptococcus pneumoniae R6

48.373

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.373

100

0.492
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.492
  radA Streptococcus mitis SK321

48.156

100

0.49

Multiple sequence alignment