Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSNT_RS05775 Genome accession   NC_017376
Coordinates   1219222..1220271 (+) Length   349 a.a.
NCBI ID   WP_000115517.1    Uniprot ID   -
Organism   Helicobacter pylori SNT49     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214222..1225271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSNT_RS05760 (HPSNT_05930) - 1215123..1216373 (-) 1251 WP_001144173.1 DUF874 family protein -
  HPSNT_RS05765 (HPSNT_05935) asd 1216805..1217845 (-) 1041 WP_000860861.1 aspartate-semialdehyde dehydrogenase -
  HPSNT_RS05770 (HPSNT_05940) hisS 1217832..1219160 (-) 1329 WP_000632481.1 histidine--tRNA ligase -
  HPSNT_RS05775 (HPSNT_05945) waaF 1219222..1220271 (+) 1050 WP_000115517.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSNT_RS05780 (HPSNT_05955) - 1220461..1220787 (-) 327 WP_000744162.1 hypothetical protein -
  HPSNT_RS05785 - 1221006..1221991 (+) 986 Protein_1115 aldo/keto reductase -
  HPSNT_RS05790 (HPSNT_05970) fusA 1222535..1224613 (-) 2079 WP_000101842.1 elongation factor G -
  HPSNT_RS05795 (HPSNT_05975) rpsG 1224625..1225092 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39514.22 Da        Isoelectric Point: 9.4831

>NTDB_id=38135 HPSNT_RS05775 WP_000115517.1 1219222..1220271(+) (waaF) [Helicobacter pylori SNT49]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQITCELFKKDESIEAIFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTRTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPVLFN
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHAAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAQTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=38135 HPSNT_RS05775 WP_000115517.1 1219222..1220271(+) (waaF) [Helicobacter pylori SNT49]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAGCATAGAAGCCATTTTCATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTCGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAGAAAAGCGTTTTGCCCTTA
AAACTGGCTTTTAACCTCCCCACTCGCACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCGTATTGTTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCAAACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.209

98.567

0.367

Multiple sequence alignment